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RAFL05-17-D14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17108)

full reading [+] show sequence

Nucleotide sequence: RAFL05-17-D14 - full reading 
CCGATAACTA GAAAAACAAT GAAGCTCTCT CAAGTCTTCT ACATTATCTT 
CTTATTCTTC CTTGTCTCAC AAGTAAAGTC AACGTCCGAT ATGATCGACC 
AAACCTGCAA ATCTTGCGCA GCCAAATCCA CGATCTTCGA TTACAACTTC 
TGTGTCTCCT CTCTCAACAA CTCTCCAATA GCTCTTCCTT CTCCGACCAA 
TCTTTCTTCT CTTGCCCTTG TTCCAATGCT CCAAGCTCTC GACAACGCCA 
CCGCAACAGC TTCCACCATT CAACAGCTTC TTATAAGCGA CGACGACGGT 
AGTTTCCGCA GTGCTTGCCT CCGTGACTGC CTCGAGCTTT ACGAGGACGC 
GACGGATAGA TTGGAGGAGG CAGTGAGAGT TTTTATTACA AGGAAAGAGT 
TAGGTACGGT TAATGTGATG GTAAGCGCCG CCATGGAATC CGCCGTGACT 
TGTGAGAATG GATTCAGGGA AAGAGACGAC GGTGACGGTG GTGGTGGAGG 
TGTGACGACG TGGACGTCTC CTATTGGTGA TGAGAATCAC AAATTGTTTG 
AGTTTGGTCA GATTGCTCTT TGTATATTCA ATATGCTCTC TTCTTCTGTC 
ACATCTCTAT CTTTCTAAAT CGTTTTCAAT CTTTTAGCTG TTTAGGCTTT 
TGTTTGTATC GAAAACGACA AAAGGATAAA GATAAATGTA TTAATGTTCA 
CTAAAAAAAA AA

Gene models with high sequence identity

  1. AT5G38610.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Pectinesterase inhibitor 3.3e-29
HMMPfam Pectinesterase inhibitor 5.7e-30
superfamily Pectinesterase inhibitor 1.7e-23
HMMSmart Pectinesterase inhibitor 6.3e-36
Gene3D Pectinesterase inhibitor 7e-27

See the detailed result >

AT5G38610.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT5G46940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-17-D14 introduced

  • F02308 - Specific phenotypes were NOT observed.
  • F05823 - seed::increased size / seed::increased length
  • F08133 - Specific phenotypes were NOT observed.
  • F28229 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found