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  3. RAFL05-17-D15

RAFL05-17-D15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07378)

full reading [+] show sequence

Nucleotide sequence: RAFL05-17-D15 - full reading 
GGATTACTCA CCTACTCGAG AGTGGTTTAG CTTTTTTGTA CCGTACATCT 
TCTTCCCAGA AACATGGCTG AGGCTTCTGA TTTGTTGGAA TGGCCTAAGA 
AGGATAACCG TCGTTTTCTC CATGTTGTCT ACCGCGTTGG TGATCTTGAT 
CGCACCATTG AGTTTTACAC TGAGGTCTTT GGTATGAAGC TGTTGAGGAA 
AAGAGATATC CCTGAGGAGA AGTATTCTAA TGCTTTTCTT GGTTTTGGAC 
CTGAAACATC TAACTTTGTT GTGGAGCTCA CATATAACTA TGGTGTTAGC 
TCATATGATA TTGGAACTGG CTTTGGGCAT TTTGCCATTT CAACTCAAGA 
TGTTTCCAAA CTGGTTGAGA ACGTCCGTGC CAAGGGTGGA AATGTGACTA 
GGGAACCTGG TCCAGTCAAA GGTGGAGGCA GTGTCATTGC GTTTGTGAAG 
GACCCTGATG GCTACACTTT TGAGCTCATC CAGAGAGGTC CAACTCCTGA 
ACCTTTCTGC CAAGTCATGC TTCGTGTTGG TGATCTCGAC CGTGCCATCA 
AATTCTATGA AAAGGCCCTC GGGATGAGAC TCTTGAGAAA GATTGAGAGA 
CCTGAGTACA AGTACACCAT AGGCATGATG GGGTATGCTG AAGAATACGA 
GTCGATAGTT TTGGAGCTGA CCTATAACTA CGACGTGACT GAGTACACAA 
AGGGCAATGC ATATGCACAG ATTGCAATAG GCACAGATGA TGTGTACAAA 
AGCGGTGAAG TTATTAAGAT AGTCAACCAA GAGCTAGGAG GAAAGATCAC 
TAGAGAAGCC GGACCTCTTC CTGGACTCGG CACCAAGATT GTCTCATTCC 
TTGATCCAGA TGGCTGGAAA ACGGTTTTGG TGGACAACAA AGATTTTCTC 
AAGGAACTGG AATGAGAAGA GCGATGAATG AAGGTCGAGA TCACAAAACC 
ATAATAATAA AAATGTGATC ATAAAATAAA AGGAAGACTT AGAGTTTGAT 
CTAAAATAAG AAGATGTGGT TTAGTTTGTG TCGTGCTATG TGTGTGTGCT 
CGTTTCTTTT GTCTTTGAGC TTAAAAGTTA AAACTCTAGT CTATATGGAC 
CTGAATAAAA ATATTTCCAC C

Gene models with high sequence identity

  1. AT1G11840.2 [+] show detail - glyoxalase I homolog
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Glyoxalase I, conserved site 0
PatternScan Glyoxalase I, conserved site 0
PatternScan Glyoxalase I, conserved site 0
HMMPanther LACTOYLGLUTATHIONE LYASE (GLYOXALASE I) 6.9e-91
HMMTigr Glyoxalase I 1.4e-96
HMMTigr Glyoxalase I 9.8e-39
superfamily Glyoxalase/Bleomycin resistance protein/Dihyd 6e-44
Gene3D no description 1.8e-42
Gene3D no description 2.6e-33
HMMPfam Glyoxalase/bleomycin resistance protein/dioxygenase 9.6e-24
HMMPfam Glyoxalase/bleomycin resistance protein/dioxygenase 2.9e-11

See the detailed result >

AT1G11840.2

Model type
Protein coding
Short Description
glyoxalase I homolog
Curator Summary
Encodes a glyoxalase I homolog ATGLX1.
Computational Description
glyoxalase I homolog (GLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: peroxisome, plasma membrane, vacuole, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1); Has 8678 Blast hits to 5178 proteins in 1682 species: Archae - 141; Bacteria - 5669; Metazoa - 503; Fungi - 263; Plants - 249; Viruses - 0; Other Eukaryotes - 1853 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-17-D15 introduced

  • F10846 - Specific phenotypes were NOT observed.
  • F14719 - Specific phenotypes were NOT observed.
  • F16019 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found