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RAFL05-17-E19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02717)

full reading [+] show sequence

Nucleotide sequence: RAFL05-17-E19 - full reading 
ACTGCCGACT AAACAGCGAA AATCCCAAAC AAAAAAATAA AAGAATGGCG 
TCTCTGTGCC TTTCTCTCCA CCAAACCCTA ACTAATCCCC TGTCGGCTCC 
CAGATGCAGA CCACTCAGCC TCTCCTTCCC CGGATCCTCA ACCTTCTCGA 
CCCGCCCCTC TAGCAGACGC GCAACCGCCT TGACGACCCG CGCCTCCTAC 
ACCCCGACGC CGGCGACTGA GCGCGTGATT TCGATAGCGT CGTACGCGCT 
GCCGTTCTTC AATTCTCTGC AGTACGGGCG GTTCCTGTTC GCGCAGTACC 
CAAGGCTGGG ATTGCTGTTC GAGCCAATCT TCCCAATCCT GAACCTGTAC 
AGATCGGTGC CGTACGCGAG CTTCGTGGCA TTCTTCGGGC TGTACCTGGG 
AGTGGTGAGG AACACGAGTT TCAGTAGGTA CGTGAGGTTC AACGCGATGC 
AGGCGGTGAC GCTGGATGTG CTCCTGGCGG TTCCGGTGCT GCTGACCCGA 
ATACTGGATC CGGGTCAAGG AGGCGGGTTT GGAATGAAGG CGATGATGTG 
GGGGCACACG GGGGTTTTCG TCTTCAGCTT TATGTGTTTT GTGTATGGAG 
TCGTCAGCTC CTTACTCGGC AAAACTCCAT ACATTCCATT TGTCGCTGAT 
GCCGCCGGTA GACAACTCTA ATTCCGGCCA ATATCTACCT CACTCAGTGT 
TCGGGTTTTC GATTCTAGAA TCGGTTATTT CTGGTTTATA AGAGAGACCA 
AATCAATCAG TGTTGTTAAT TAACCATTAC CGTTTTG

Gene models with high sequence identity

  1. AT2G47840.1 [+] show detail - Uncharacterised conserved protein ycf60
    E-value: 0; Score: 99.87

 

InterPro Scan Digest

See the detailed result >

AT2G47840.1

Model type
Protein coding
Short Description
Uncharacterised conserved protein ycf60
Computational Description
Uncharacterised conserved protein ycf60; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55710.1); Has 358 Blast hits to 358 proteins in 92 species: Archae - 0; Bacteria - 125; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-17-E19 introduced

  • F24535 - rosette leaf::abnormal / rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::abnormal / stem::decreased thickness / stem::abnormal / fruit::abnormal

Mutant lines with disrupted or induced

5 mutant lines found