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  3. RAFL05-17-F20

RAFL05-17-F20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17112)

full reading [+] show sequence

Nucleotide sequence: RAFL05-17-F20 - full reading 
GGAGAAGAGA TCGAGAGAAG AATAGTTTGA TCATCTTGTG AGAAAAATAA 
TGGCTGCTTC AGTGATGCTA TCTTCGGTGA CATTGAAACC AGCTGGTTTC 
ACGGTGGAGA AGACGGCGGC TAGAGGATTA CCGTCGCTCA CAAGAGCTCG 
TCCCTCCTTC AAAATTGTCG CCAGTGGCGT CAAGAAGATC AAGACCGACA 
AGCCCTTCGG AATTAACGGC AGCATGGACT TGAGGGACGG CGTCGACGCC 
TCCGGCAGAA AGGGCAAGGG ATACGGTGTT TACAAGTACG TCGACAAGTA 
TGGAGCTAAC GTCGATGGAT ACAGTCCTAT TTACAACGAG AACGAGTGGT 
CAGCGAGTGG TGACGTGTAC AAGGGAGGAG TCACCGGATT GGCAATTTGG 
GCGGTAACTC TCGCCGGAAT TCTTGCCGGA GGTGCTCTTC TTGTGTACAA 
CACAAGTGCT TTGGCTCAGT AAATCTTAAA GTTGTTAGCG CATGTGTAAT 
CATGTTTCTA TAAATGTTTC TGTGTTGTTC TCTTTCTCTC TAATGTTGTA 
AAACTCAGAC ATACTTTGAA TTTATAAGAC TTCTAGTGTT TGTACAAAAA 
AAA

Gene models with high sequence identity

  1. AT1G79040.1 [+] show detail - photosystem II subunit R
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G79040.1

Model type
Protein coding
Short Description
photosystem II subunit R
Curator Summary
Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.
Computational Description
photosystem II subunit R (PSBR); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosystem II oxygen evolving complex assembly, photosynthesis, response to light intensity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, photosystem II; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbR (InterPro:IPR006814); Has 134 Blast hits to 134 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-17-F20 introduced

  • F00938 - Specific phenotypes were NOT observed.
  • F04637 - Specific phenotypes were NOT observed.
  • F05128 - Specific phenotypes were NOT observed.
  • F05150 - Specific phenotypes were NOT observed.
  • F11908 - Specific phenotypes were NOT observed.
  • F13223 - seed::increased size
  • F18817 - rosette leaf::desaturated green / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal
  • F19530 - Specific phenotypes were NOT observed.
  • F19626 - Specific phenotypes were NOT observed.
  • F20630 - Specific phenotypes were NOT observed.
  • F23711 - Specific phenotypes were NOT observed.
  • F27121 - seed::increased size
  • F27627 - Specific phenotypes were NOT observed.
  • F28101 - Specific phenotypes were NOT observed.
  • F28303 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

17 mutant lines found