1. Home
  2. Full-length cDNAs
  3. RAFL05-17-H03

RAFL05-17-H03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09354)

full reading [+] show sequence

Nucleotide sequence: RAFL05-17-H03 - full reading 
CCCCGAGCCA CCACCATTCT CTTTTACTCC TTCGCCGAAT CTCACAACGC 
CAAATTTTGG CGTTTCCACA GATCTATACA TCCCGGAGAT CTCCAACAAA 
TCCGACACCG TTTTCTACTC CGACGAATCC TCCTCCGTAG ATCTAGTCAA 
AAAACGAACC TAACGAAATT CGAAATCCTG ATCGGAGATG GCTCCGAGTA 
TTCGAAAAGC GATTGGTGCG GTTAAAGACC AAACAAGCAT AGGAATCGCT 
AAAGTAGCAA GCAACATGGC TCCAGATCTA GAAGTAGCCA TCGTGAAAGC 
TACAAGTCAC GACGACGATC CCGCAAGCGA GAAATACATT CGTGAGATTC 
TAAACCTGAC CTCTCTCTCT CGCGGCTACA TCCTCGCTTG TGTTACTTCC 
GTTTCACGGC GATTGAGTAA GACGCGTGAT TGGGTTGTTG CTCTCAAGGC 
TCTTATGCTT GTGCATAGAC TTCTTAATGA AGGAGATCCT ATTTTTCAAG 
AAGAGATTCT TTATTCAACT AGACGAGGTA CGAGGATGTT AAACATGTCT 
GATTTTCGCG ATGAAGCGCA TTCGAGTTCG TGGGATCATT CGGCTTTCGT 
TAGAACTTAT GCTGGTTACT TGGATCAGAG GCTTGAGTTA GCTTTGTTTG 
AGAGGAAAAG TGGTGTGTCG GTGAATAGTG GTGGTAATAG TAGTCATCAT 
AGTAATAATG ATGATCGATA TGGGAGAGGA AGAGATGATT TCAGGTCTCC 
ACCGCCGCGT TCTTATGATT ATGAGAACGG TGGTGGTGGT GGTAGTGACT 
TTAGAGGTGA TAATAATGGT TATGGTGGTG TACCGAAGAG ATCTCGGTCT 
TACGGAGATA TGACTGAGAT GGGAGGAGGA GGAGGAGGAG GAGGGAGAGA 
TGAGAAGAAA GTTGTTACGC CTTTAAGGGA AATGACGCCC GAAAGGATTT 
TCGGAAAGAT GGGTCATCTT CAACGGTTAC TTGATAGGTT TTTGTCATTG 
AGACCTACTG GTTTAGCTAA GAACAGTAGG ATGATATTGA TCGCGTTGTA 
TCCCGTTGTG AGGGAGAGTT TTAAGCTGTA TGCTGATATT TGTGAGGTTT 
TGGCTGTTTT GTTGGATAAG TTTTTCGATA TGGAGTATTC GGATTGTGTC 
AAGGCCTTTG ATGCTTATGC TAGTGCGGCT AAACAGATTG ATGAGCTTAT 
TGCGTTTTAT AATTGGTGTA AGGAAACGGG TGTGGCGAGA TCGTCTGAGT 
ATCCGGAAGT TCAGAGGATT ACAAGCAAGT TGTTGGAGAC TTTGGAAGAG 
TTTGTTAGAG ATAGGGCAAA AAGAGGGAAG AGTCCCGAGA GGAAAGAGAT 
CGAAGCTCCT CCTCCGGTAG TTGAAGAAGA GGAGCCTGAG CCTGATATGA 
ATGAGATCAA AGCTCTTCCT CCTCCCGAGA ATTACACTCC TCCACCTCCG 
CCTGAACCAG AACCTCAGCC CGAAAAACCG CAATTTACCG AGGATTTAGT 
TAACTTGAGG GAGGATGAAG TCACAGCTGA TGACCAAGGG AACAAGTTTG 
CGCTTGCACT CTTTGCTGGT CCACCGGGTA ATAACGGAAA ATGGGAAGCT 
TTCTCCTCGA ACGGAGTGAC CTCTGCTTGG CAGAATCCCG CTGCAGAGCC 
CGGTAAAGCG GATTGGGAAT TGGCATTGGT TGAAACAACG AGCAATTTAG 
AAAAACAGAC AGCCGCTTTG GGTGGTGGGT TCGATAACTT GTTGCTCAAC 
GGGATGTATG ATCAAGGAAT GGTCAGACAA CACGTTAGCA CCTCGCAATT 
GACAGGTGGT AGCGCGAGCA GCGTAGCTTT ACCCTTACCT GGTAAAACCA 
ACAATCAAGT ATTAGCCTTA CCTGCACCAG ATGGAACCGT TGAGAAAGTG 
AACCAAGACC CATTCGCAGC TTCACTAACC ATTCCACCAC CTTCGTACGT 
GCAAATGGCC GAGATGGAGA AGAAGCAGTA TCTACTGAGC CAAGAGCAGC 
AGCTATGGCA GCAATATCAA CGTGATGGGA TGAGAGGTCA AGCCAGTTTG 
GCGAAGATGA ACACCGGTCC AGTTCCGGCT TACGGAATGC CACCTGTCAA 
CGGGATGGGA CCGCCACCGA CGGGGTATTA CTACAACAAT CCTTACTGAT 
TCATTCTTTT TTGCACCCAT TCATATATGT GTAGATGACT CGTCTTCCAC 
CTTTGATCTT GTGTGTGTTT TATTATATCC CCTCGGATTG TCGTAAAACG 
ATTCCATCTT CTTCCTTGTC TCTGCTCGAG TTTGATTTAT AGTTTATGTA 
CACTTTCTTG AGAATCTTGA TTCCCTTCTG TATAACATTT TGATATCATT 
CATGTTTCCA CTGTTTAACT TAAAAC

Gene models with high sequence identity

  1. AT2G25430.1 [+] show detail - epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam ANTH 5.6e-41
HMMPfam ANTH 9.5e-39
ProfileScan Epsin-like, N-terminal 33.248
HMMPanther CLATHRIN ASSEMBLY PROTEIN 3.2e-259
HMMPanther CLATHRIN ASSEMBLY PROTEIN 3.2e-259
Gene3D ENTH/VHS 6.1e-32
Gene3D Clathrin adaptor, phosphoinositide-binding, GAT-like 4.3e-36
HMMSmart Epsin-like, N-terminal 2.7e-45
superfamily GAT-like domain 8.2e-42
superfamily ENTH/VHS 1.6e-31

See the detailed result >

AT2G25430.1

Model type
Protein coding
Short Description
epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related
Computational Description
epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT4G32285.2); Has 1786 Blast hits to 1328 proteins in 221 species: Archae - 4; Bacteria - 135; Metazoa - 673; Fungi - 126; Plants - 678; Viruses - 2; Other Eukaryotes - 168 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-17-H03 introduced

  • F03241 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found