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Full-length cDNAs
RAFL05-17-I01

RAFL05-17-I01

RIKEN Arabidopsis Full-length cDNAs

CCCGAAAAAC CCAAATTCTC TCAGCGCCGG TCAAATACTT GTCTCTCTCT 
CTCTCTCTCT TTCACTCTTG TCTTGTCTCC TTCGAAGCTG TTTGTTCTGT 
AAGAAAGATG GAAGCAGGTG GCGCGTACAA TCCACGCACT GTTGAAGAGG 
TGTTTAGGGA TTTTAAGGGT CGTAGAGCTG GCATGATTAA GGCTTTAACC 
ACTGATGTTC AGGAGTTTTT CCGACTTTGT GATCCCGAAA AGGAGAACCT 
TTGCCTTTAC GGACATCCAA ATGAGCACTG GGAAGTGAAT TTGCCAGCTG 
AAGAGGTTCC TCCTGAGCTC CCAGAGCCTG TCTTGGGTAT CAATTTTGCC 
AGAGACGGGA TGGCGGAAAA GGATTGGTTG TCCCTTGTTG CTGTCCACAG 
TGATGCTTGG CTTCTTGCTG TTGCTTTCTT TTTTGGAGCC AGGTTTGGAT 
TTGACAAAGC TGATAGGAAG AGGCTTTTCA ATATGGTGAA TGACCTCCCA 
ACAATCTTTG AGGTTGTAGC TGGCACTGCT AAGAAACAAG GAAAAGATAA 
GTCCTCTGTT TCCAACAACA GCAGCAACAG ATCCAAATCA AGCTCCAAGC 
GAGGATCTGA ATCCCGTGCC AAGTTCTCAA AGCCGGAGCC GAAAGATGAT 
GAGGAGGAGG AAGGGGAAGG TGTGGAAGAG GAGGATGAGG ATGAGCAAGG 
TGAAACACAG TGTGGAGCAT GTGGTGAGAG CTATGCAGCT GATGAGTTCT 
GGATTTGCTG TGACCTCTGT GAGATGTGGT TTCATGGAAA GTGTGTTAAG 
ATAACACCAG CAAGAGCTGA GCACATCAAG CAATACAAGT GCCCTTCTTG 
CAGCAACAAA AGGGCTCGTT CCTAAATTTG TTGACCGCTC GCTTCTGTGT 
ATCTACCTTT GCATATGATG ATGAACAGCT TAACTGTTTG GTTTAGATCA 
GATTTGTCAT ATGGATTTGG TAATTTAGGA AGACATTTTA GTTTTTTCAT 
TGTTACATTT TGGCGATTGA AGGGATAACT CTTTGTTTAG GGGAAAAAAA 
AAA

Gene models with high sequence identity

AT5G26210.1 [+] show detail - alfin-like 4
E-value: 0; Score: 99.90

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF3594	1.4e-80
HMMPfam	Zinc finger, PHD-finger	9.2e-10
PatternScan	Zinc finger, PHD-type, conserved site	0
HMMPanther	PHD/F-BOX CONTAINING PROTEIN	9.1e-11
superfamily	Zinc finger, FYVE/PHD-type	1.2e-11
Gene3D	no description	1.6e-15
ProfileScan	Zinc finger, PHD-finger	9.25
HMMSmart	Zinc finger, PHD-type	1.8e-08

See the detailed result >

AT5G26210.1

Model type: Protein coding
Short Description: alfin-like 4
Curator Summary: AL4 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description: alfin-like 4 (AL4); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 3 (TAIR:AT3G42790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL05-17-I01 introduced

F01507 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found