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  3. RAFL05-17-L24

RAFL05-17-L24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02732)

full reading [+] show sequence

Nucleotide sequence: RAFL05-17-L24 - full reading 
AAGTATCAAA AAAATTACAA CTTTACGATT TGCTTAGAAA GGAGAAGACA 
TCTGGAGCAA CAGGATTTAC AAAAGTTATT ATCTTTATCG ATTTCTCTTC 
TTCCTAGACC CAACAGACGA AGAGAATTTG TTGTTGGTTG TCTCTGGTCT 
CTTCGTCTAG GTTTTTTTTG GGTTATTAAA GATGGTGAGG ATCGTGAGAA 
GTTGTTTACA GTCCATGTTA AAGCTCGTGA ATTCTCTAAT TGGGATGGTT 
GGGATTGCTA TGATTCTCTA CGCTGTTTGG CTGATTAGGC AATGGCAAGA 
ACAAATGGGA AATCTTCCTT TTGCTGATTC TGATCACCCT GTTCCGTGGT 
TCATTTATTC ATTTCTTGGT CTCGGGGCCA TTCTCTGTGT TGTCACTTGT 
GCCGGGCACA TAGCTGCTGA AACCGTGAAT GGATGTTGCC TTTACTTGTA 
TATGGGATTC ATAGTCTTGC TAACTATGGT TGAAGGCGGT GTAGTTGCCG 
ATATCTTTCT AAACCGTGAC TGGAAAAAGG ACTTTCCAGA GGATCCAAGT 
GGTGCTTTCC ACCAGTTCTC TAAGTTCATC GAGTCAAACT TCAAGATTTG 
CAAGTGGATA GGTCTCTCTA TTGTCTGTGT CCAGGGTCTA TCAGTTTTAA 
TAGCCATGTT GCTCAAAGCT CTTGGACCTC ACCCTCACCG ACATTATGAT 
AGTGACGATG AATACAATGT AAGCACAGTT GCACTCCTGC AGGATGCTCG 
TCAGCCGCCT CCATACGTTG TTGGAGAACC CATGTATGGA GCCAAACCGG 
GAGCTTGGAC AGTTAGATTA ATGAAAGGGC AAACCGGTGA GAGGTGAAAA 
CAAAGAAACT CGTAGAAGAA AATGGCAAAG CAGAGTCTGC TCTTTCCATG 
TGTGCATTTA CTTTGGCTTC TTATTGCATC TCTTTCTTTC ACTATTTATC 
TCTTGTAAAT GTTGAATACA TATATTTGGG ATGTTCTTAC ATATTAAAGA 
CTATGTGATG TATGTAAATC TCTCTCCACT CTATTGTTGA CCAAAATTAT

Gene models with high sequence identity

  1. AT2G20740.1 [+] show detail - Tetraspanin family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT2G20740.1

Model type
Protein coding
Short Description
Tetraspanin family protein
Computational Description
Tetraspanin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1); Has 160 Blast hits to 160 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-17-L24 introduced

  • F03545 - Specific phenotypes were NOT observed.
  • F07915 - Specific phenotypes were NOT observed.
  • F14128 - seed::increased size / seed::increased length
  • F17947 - seed::increased size
  • F24342 - Specific phenotypes were NOT observed.
  • F26018 - Specific phenotypes were NOT observed.
  • F27407 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found