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  3. RAFL05-17-O21

RAFL05-17-O21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03040)

full reading [+] show sequence

Nucleotide sequence: RAFL05-17-O21 - full reading 
ATCCTCGCGT CGCGCCTTCT TGTCTTCTCT CTCAATCCAG CATATTCCTA 
CGCAAATCCC TTATCGTTTT CATGTTTGTC CTGGTTTAAA TCTTCAATCT 
CCTACCCGGT CTTTTCATCC TCCGATGGCA TTCCTTGTTC GTTCGCCGGA 
GATACCCACC GTCTCGGCGA GAATCTTCTC CGATGCGAAT TCGAGTGTTA 
TTAGTCATGT GTTTATGAGG AGGAAGGCTA CGGTTTCGGC GATTGACGCC 
AGAGATTTGC CTGGTGTTAA GAATCCGAAA TCGAGATTGT ACTGGCAATT 
CTCAGCTCCG GTGAAAGAAG ACTACAAGAT TAGCAGAGAG GAGGAAGAAG 
AAGAAGAAGA AGATAAGCAG AGTTACTACG TGAATATGGG TCACGCCGTT 
CGTAGTATCA GAGAAGAGTT TCCTTTGTTG TTCTACAAAG AGCTTAATTT 
TGACATTTAC AGGGATGATA TTGTTTTCAA AGACCCTATG AACACTTTCA 
TGGGAATTGA TAACTACAAA TCCATATTTG GGGCCTTACG TTTCCATGGA 
AGGATCTTCT TCAGAGCACT ATGTGTGGAC ATTGTTAGTG TTTGGCAACC 
CACAGAGAAC ACTCTGATGA TACGATGGAC TGTTCATGGA ATTCCTCGTG 
GTCCGTGGGA GACTCGTGGT CGATTCGATG GTACTTCTGA GTATAAATTC 
GATAAGAATG GCAAGATTTA TGAGCATAAA GTCGATAACA TAGCCATTAA 
TTCGCCTCCA AAGTTTCAAA TGCTCACTGT TCAAGAGCTT GTTGAAGCCA 
TTAGCTGCCC TTCGACTCCC AAGCCGACCT ACTTTGAGTT CGGAGATTGA 
TTCATCATCA TCGTCTGAAA CATCATGCTG GTGTTATGTA TACTAGTAGT 
CTTTTGTGTG GTTATAAATA GAGTGGTACT GTAATATAGA TGAAGAAGGA 
ACGATTTAAA ATAAACCCAA TAGCATGAAT ACATTACACG CTTTTTTTGC 
GTATAATAAT CAATAAAACG CCTATATGTA CATAAATTTG G

Gene models with high sequence identity

  1. AT2G46220.1 [+] show detail - Uncharacterized conserved protein (DUF2358)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT2G46220.1

Model type
Protein coding
Short Description
Uncharacterized conserved protein (DUF2358)
Computational Description
Uncharacterized conserved protein (DUF2358); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2358) (TAIR:AT1G16320.1); Has 199 Blast hits to 199 proteins in 64 species: Archae - 0; Bacteria - 74; Metazoa - 19; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-17-O21 introduced

  • F00828 - Specific phenotypes were NOT observed.
  • F02736 - Specific phenotypes were NOT observed.
  • F03728 - Specific phenotypes were NOT observed.
  • F04935 - Specific phenotypes were NOT observed.
  • F07005 - Specific phenotypes were NOT observed.
  • F11103 - Specific phenotypes were NOT observed.
  • F12847 - seed::increased size
  • F14314 - rosette leaf::dark green / rosette leaf::epinastic / rosette leaf::decreased width / rosette leaf::abnormal / cauline leaf::epinastic / whole plant::decreased height / stem::present in fewer numbers in organism
  • F18938 - Specific phenotypes were NOT observed.
  • F22401 - Specific phenotypes were NOT observed.
  • F22512 - Specific phenotypes were NOT observed.
  • F24101 - Specific phenotypes were NOT observed.
  • F25705 - rosette leaf::abnormal / stem::abnormal
  • F26844 - Specific phenotypes were NOT observed.
  • F27506 - Specific phenotypes were NOT observed.
  • F29920 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

18 mutant lines found