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  3. RAFL05-17-P08

RAFL05-17-P08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03041)

full reading [+] show sequence

Nucleotide sequence: RAFL05-17-P08 - full reading 
GCTCTCGCGC TTTTCTCTCT CTCTCTCGCG TTCGTTCTTA TCCACGAGCT 
CTGCACCGTC GCAATCTCCG TCTTCTCCAT TTAGATCCAA CACAGAGCCT 
TTTCTACATG AAATTCGGCA AAGAGTTTCG TACTCACCTC GAAGAAACTT 
TACCAGAGTG GAGAGACAAG TTCCTTTGCT ATAAACCTTT AAAAAAGCTT 
CTCAAATATT ATCCTTATTA CTCCGCCGAT TTTGGACCCG CCAATTCCGA 
TCACAACGAT TCGCGTCCAG TATTTGCTGA TACTACTAAC ATCTCTTCCG 
CCGCCGACGA CGGCGGTGTG GTTCCCGGCG TCAGGCCATC GGAAGATCTC 
CAGGGTTCGT TTGTGAGGAT ACTTAACGAT GAACTTGAGA AGTTTAACGA 
TTTTTACGTT GATAAGGAAG AAGATTTCGT TATCAGATTA CAGGAGCTCA 
AGGAAAGAAT CGAGCAAGTT AAAGAAAAGA ATGGGGAATT TGCATCAGAA 
AGTGAGTTCA GCGAAGAAAT GATGGATATT CGGAGAGACC TTGTTACCAT 
TCATGGCGAG ATGGTGCTCC TGAAAAACTA CAGCTCCCTT AATTTTGCAG 
GACTTGTCAA GATTTTGAAG AAGTACGATA AAAGAACAGG TGGACTTTTA 
CGTTTGCCTT TCACACAGCT TGTTCTCCAT CAACCCTTCT TTACTACAGA 
GCCACTTACT AGGTTAGTCC GTGAATGTGA GGCCAATCTT GAGCTTCTTT 
TTCCTTCAGA AGCGGAAGTT GTAGAGTCTT CTAGCGCAGT GCAAGCACAC 
TCAAGCTCAC ATCAGCACAA CTCCCCAAGA ATCTCAGCTG AGACTTCCTC 
AACTCTCGGC AATGAAAATC TTGATATATA TAAGAGTACA CTCGCTGCAA 
TGAGAGCTAT AAGAGGGTTA CAAAAGGCTA GCTCGACGTA CAACCCTTTA 
TCATTCTCAT CGCTTCTTCA GAACGAGGAT GATGAGACGG TAACAGCTGA 
AAACTCTCCA AACTCTGGGA ACAAAGATGA TTCAGAGAAG GAAGATACTG 
GACCTTCCCA CTGATCAGAA GAGAATGATG CTCTTTTTGA TCAAGATTTT 
GAGAATTTGC TTCTTGATTT CACCCTAACT TTTCATAAAA TTAACACATT 
TTACTTTACT TCTTCACCTT TTGCAGGACA CAACTTCTGT ATGCATTTGA 
ATTGTAGTAC AGTCGTTTAT AGATTTTCAA TGAAATTTTC CTCCATTGTC 
TT

Gene models with high sequence identity

  1. AT5G15330.1 [+] show detail - SPX domain gene 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam SPX, N-terminal 7.3e-21
HMMPfam SPX, N-terminal 2.3e-12
ProfileScan SPX, N-terminal 27.879
Coil coiled-coil 0
HMMPanther XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIR 4.1e-45
HMMPanther XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIR 4.1e-45

See the detailed result >

AT5G15330.1

Model type
Protein coding
Short Description
SPX domain gene 4
Computational Description
SPX domain gene 4 (SPX4); CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX domain gene 1 (TAIR:AT5G20150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-17-P08 introduced

  • F12032 - Specific phenotypes were NOT observed.
  • F25838 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found