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  3. RAFL05-18-A09

RAFL05-18-A09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02746)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-A09 - full reading 
CTCGGAGATT CAATCACTCA TGGCGAACGA AGACGACGAC GGTGAGAAAT 
CCAGAAGTCT GCACCAACAG ATTGCTAGAA AACCCAAAAC CCAGATCGTG 
ATTGGTGTGC CATCGTACCA GGAAGTTTTG GAAAGCTCAC AGACGAAGTC 
CACGCCTCCA TCTCTCTTCA AGCCTTCCCA GAGTTTCTCT CAGGCTTTCG 
CTTTCGTCAA GTCGTCCGAC GTCTACTCTC CTCCTCCTCC TTCCTCCGCA 
GCCGCCTCTT CTTCTCAGCC GTCGGGCGCT TCTCAGGTGC CCCACAGTTC 
AAGCCAAACG CATCAAACTG ATGGAGCCTC ATCTTCTTCT ACTCCTGTAG 
CCACTGGCTC TGTACCATCA AACACAACTC AAAATCGTAA CGCTATTCTC 
GTTAGCCATC GACAGAAAGG AAACCCGCTT CTTAAACATA TCAGGAATGT 
GAAATGGGTT TTCTCAGATA TCATTCCAGA TTACGTGCTT GGTCAAAACT 
CTTGCGCTTT GTATTTAAGC TTGCGGTATC ATCTCCTACA TCCGGATTAC 
CTCTATTTCC GCATTAGGGA ACTACAAAAG AATTTCAAGC TAAGTGTTGT 
TCTTTGCCAT GTCGACGTGG AAGATACGGT GAAACCGTTG CTTGAAGTCA 
CAAAAACCGC TCTACTTCAT GATTGCACTC TATTGTGTGC CTGGAGCATG 
ACAGAATGTG CCCGTTATTT GGAAACGATA AAAGTCTATG AAAACAAACC 
TGCAGATCTC ATCCAAGGCC AAATGGATAC AGATTACCTT TCACGGCTAA 
ACCATTCTCT TACAAGCATT CGACATGTAA ACAAGAGCGA TGTAGTTACA 
CTTGGTTCTA CATTCGGGTC TCTTGCTCAT ATAATCGATG CATCCATGGA 
AGATTTAGCA CGTTGTCCCG GGATTGGCGA ACGTAAGGTG AAGCGGTTGT 
ATGATACATT CCACGAGCCT TTCAAGCGTG CAACTTCGAG CTACCCGTCT 
GTTGTAGAAC CACCAATCCC GGAAGCTCCA GTTGAGAAGG ATGTGAACTC 
AGAGGAACCT GTTGAAGAAG ACGAGGATTT TGTGGAGGAC TCGAGAAAAC 
GCAAGAAGAA GGAGCCCGAG CCCGAGAAAA CTGTGAAGAC CGCACTCTCT 
GCTGTTTTTG CTCGTTACTC TGATAGACTT AGCAAGAAAA AGGAGAAACA 
GAAGGAGAAA GATACAACAA CGGCGTCAGA TGCTGAAACC CACCAAAATT 
AACACGGTTT TGTTCCTTGG GTAAGGCCAT GGTGACCACA TTCCTAGGAT 
TGTAACTTAA TGATAATAAA AAAGCTTTAC TGTGTCTAAT TTGTGTGATC 
TCTACCATAG AATTGGTTGG TTATTGAAGC CTGCGTGTAT AAATTTCAAA 
GGGTTGTTAC TACTTTGTTA TCTTTTTTCT TGGTCTGGGC CATGTGCAAT 
AGTATTATAA ACAAACAAAA C

Gene models with high sequence identity

  1. AT3G05210.1 [+] show detail - nucleotide repair protein, putative
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily RuvA domain 2-like 5e-16
HMMPfam DNA repair protein rad10 1.4e-29
BlastProDom DNA repair protein rad10 1e-69
Gene3D no description 8.4e-05
HMMPanther EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1 3.6e-113
HMMTigr DNA repair protein rad10 5.7e-53

See the detailed result >

AT3G05210.1

Model type
Protein coding
Short Description
nucleotide repair protein, putative
Curator Summary
encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10.
Computational Description
ERCC1; FUNCTIONS IN: 5'-flap endonuclease activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), DNA repair protein rad10 (InterPro:IPR004579), RuvA domain 2-like (InterPro:IPR010994); Has 658 Blast hits to 452 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 166; Fungi - 153; Plants - 44; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-A09 introduced

  • F25010 - Specific phenotypes were NOT observed.
  • F27423 - Specific phenotypes were NOT observed.
  • F28921 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found