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  3. RAFL05-18-A12

RAFL05-18-A12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17118)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-A12 - full reading
CCGGCTTTGT TACCGGAGCT CTGGACGGAG ATCCTTGTAC CGATTTGTGC 
GGTGATTGGT ATCGCCTTTT CGCTTTTCCA ATGGTACGTT GTATCTCGCG
TGAAACTCAC CTCTGACCTC GGCGCATCGT CTTCCGGTGG AGCTAACAAT
GGGAAGAATG GATACGGTGA TTATCTAATC GAGGAAGAGG AAGGTGTTAA
TGACCAGAGT GTTGTCGCTA AGTGCGCTGA GATTCAGACT GCTATTTCCG
AAGGTGCAAC TTCATTCCTA TTCACGGAGT ACAAATATGT TGGTGTCTTC
ATGATTTTCT TTGCTGCTGT TATCTTTGTT TTCCTCGGCT CTGTTGAGGG
ATTCAGCACT GATAACAAGC CTTGTACTTA CGACACCACC AGAACCTGCA
AGCCTGCATT GGCTACTGCA GCTTTCAGTA CCATTGCTTT CGTGCTTGGT
GCTGTTACCT CTGTTCTATC TGGTTTCCTT GGGATGAAGA TTGCTACATA
CGCTAATGCT AGGACCACTT TGGAGGCGAG GAAAGGTGTT GGAAAGGCGT
TCATTGTTGC ATTCAGGTCT GGTGCTGTGA TGGGTTTCCT TCTTGCAGCG
AGTGGTCTAT TGGTGCTTTA CATTACTATC AATGTGTTCA AGATCTATTA
CGGAGATGAC TGGGAAGGTC TTTTTGAGGC TATTACTGGT TATGGTCTTG
GTGGGTCTTC CATGGCTCTC TTTGGCCGTG TTGGTGGTGG GATCTACACT
AAGGTTGCTG ATGTCGGCGC TGACCTTGTC GGTAAAATTG AGAGGAATAT
TCCAGAGGAT GATCCAAGAA ACCCAGCTGT CATTGCTGAT AATGTCGGTG
ACAATGTTGG TGACATTGCT GGTATGGGAT CTGATCTCTT TGGATCATAT
GCTGAAGCAT CATGCGCTGC TCTTGTTGTT GCCTCGATCT CATCTTTCGG
AATCAACCAC GACTTCACTG CCATGTGCTA CCCATTGCTC ATCAGTTCAA
TGGGAATCTT GGTTTGTTTG ATCACAACTC TCTTTGCCAC TGACTTCTTT
GAGATTAAGC TTGTCAAGGA GATTGAACCA GCATTGAAGA ACCAGCTCAT
TATCTCAACT GTTATTATGA CTGTTGGTAT TGCTATTGTG TCATGGGTTG
GCTTACCGAC CTCCTTTACC ATCTTCAACT TTGGAACACA AAAAGTTGTC
AAGAACTGGC AGCTATTCCT TTGTGTTTGT GTTGGTCTTT GGGCTGGACT
CATTATTGGT TTCGTCACTG AGTACTACAC TAGTAACGCC TACAGCCCTG
TGCAAGATGT TGCAGATTCA TGCAGAACTG GTGCAGCTAC CAATGTTATC
TTCGGCCTTG CTCTTGGTTA CAAATCCGTC ATTATTCCAA TCTTTGCTAT
TGCTATCAGT ATATTCGTTA GCTTCAGCTT TGCTGCTATG TATGGTGTTG
CTGTTGCTGC TCTTGGTATG CTCAGTACCA TTGCCACTGG TTTGGCAATT
GATGCTTATG GTCCCATCAG TGACAATGCT GGTGGTATTG CTGAAATGGC
TGGAATGAGC CACCGCATCC GTGAAAGAAC TGATGCTCTT GATGCCGCTG
GAAACACCAC TGCTGCTATT GGAAAGGGAT TTGCCATTGG CTCTGCTGCC
CTAGTCTCCT TGGCTCTCTT TGGTGCCTTT GTGAGCCGTG CAGGGATCCA
CACCGTAGAT GTTTTGACCC CTAAAGTTAT CATTGGGCTC CTTGTTGGTG
CCATGCTTCC TTACTGGTTC TCTGCCATGA CAATGAAGAG TGTGGGAAGT
GCAGCTCTTA AGATGGTTGA AGAAGTTCGC AGGCAGTTCA ACACCATCCC
TGGACTTATG GAAGGAACCG CAAAACCAGA CTACGCCACA TGTGTCAAGA
TCTCCACCGA TGCTTCCATC AAGGAAATGA TACCTCCTGG TTGCCTTGTC
ATGCTCACAC CTCTCATTGT TGGTTTCTTC TTTGGAGTTG AGACCCTCTC
TGGTGTCCTC GCCGGATCTC TTGTATCCGG TGTTCAGATC GCCATATCAG
CATCTAACAC TGGTGGTGCC TGGGACAACG CCAAGAAATA CATCGAGGCT
GGTGTATCAG AGCACGCAAA GAGCCTTGGA CCAAAGGGTT CAGAGCCACA
CAAGGCAGCT GTGATTGGAG ACACAATTGG AGACCCATTG AAGGATACTT
CAGGACCTTC ATTGAACATC CTCATCAAGC TCATGGCTGT TGAGTCTCTT
GTCTTTGCTC CCTTCTTCGC CACTCACGGT GGTATCCTTT TCAAGTACTT
CTAAACTCAA TCCGAGGGAA GAAGATGACG ATGATGAAGA AGAAGAAGAT
GATGATGGCG ATCGATTCTA AACTTTCTTT TTTACCATTC TTATTTTCGT
TTACCGTAGG TGGTTAAAAA ACCTTTTTTG TTGATGAGGC TCATTTAAAG
AACCAACCAA ATGATGTTTC TTTCTCTCAC TCTCTGTCTT TCTGTTTTCT
TTTTGTTCTG TTTAGAATTT AGAAATCCAC CAAGTATTCG GTCGAGACTT
GTTTTAGCCG TTACTTTCTG CTGCTTATAT TTCCTAAATT GGTTGTCTTC
TTCGAGACAT AATTGGAATC AAAAAAAAAA

Gene models with high sequence identity

  1. AT1G15690.1 [+] show detail - Inorganic H pyrophosphatase family protein
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
HMMTigr Inorganic H+ pyrophosphatase 0
HMMPIR Inorganic H+ pyrophosphatase 0
HMMPfam Inorganic H+ pyrophosphatase 0

See the detailed result >

AT1G15690.1

Model type
Protein coding
Short Description
Inorganic H pyrophosphatase family protein
Curator Summary
Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1.
Computational Description
AVP1; FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity; INVOLVED IN: response to water deprivation, response to salt stress, establishment or maintenance of transmembrane electrochemical gradient, leaf development, auxin polar transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: Inorganic H pyrophosphatase family protein (TAIR:AT1G16780.1); Has 6470 Blast hits to 6448 proteins in 793 species: Archae - 67; Bacteria - 1322; Metazoa - 5; Fungi - 1; Plants - 304; Viruses - 0; Other Eukaryotes - 4771 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-A12 introduced

  • F08035 - Specific phenotypes were NOT observed.
  • F19739 - Specific phenotypes were NOT observed.
  • F22936 - Specific phenotypes were NOT observed.
  • F24608 - Specific phenotypes were NOT observed.
  • F27429 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

7 mutant lines found