1. Home
  2. Full-length cDNAs
  3. RAFL05-18-B19

RAFL05-18-B19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02750)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-B19 - full reading 
GTCTCGAGTC GCTGAGATCC ATCAGTAAAA GGTCTGCAAA ATGGTTGCTC 
AGGGATTCAC TGTGGATCTT AAAAAGCCCC TTGTATTTCA GGTTGGTCAT 
CTTGGAGAAG ATTATGAGGA ATGGGTTCAC CAACCTATCG CGACCAAGGA 
AGGCCCTCGG TTTTTTCAGA GTGACTTTTG GGAGTTCTTG ACACTTACAG 
TTTGGTGGGC AGTTCCTGTC ATTTGGTTGC CAGTTGTAGT CTGGTGCATA 
TCAAGGTCAG TAAGTATGGG ATGTTCACTT CCAGAAATCG TCCCAATTGT 
TGTCATGGGA ATATTCATCT GGACATTTTT TGAATACGTT CTTCACCGGT 
TCGTTTTCCA CATAAAAACG AAGAGTTACT GGGGAAACAC TGCACACTAT 
CTTATTCACG GATGCCATCA TAAGCACCCG ATGGACCACC TTCGGCTCGT 
CTTTCCTCCT ACTGCAACAG CGATTTTATG CTTTCCGTTC TGGAACATTG 
CGAAGGCTAT CTCAACTCCT TCAACCGCAC CTGCATTGTT TGGTGGAGGC 
ATGCTCGGAT ATGTGATGTA CGATGTCACT CATTATTACC TTCACCATGC 
CCAACCTACT AGACCAGTGA CCAAAAATCT CAAGAAGTAC CATTTGAATC 
ATCACTTCAG GATTCAGGAC AAAGGATTTG GTATAACTTC GTCGTTATGG 
GACATAGTCT TTGGGACACT TCCCACCACA AAAGCCCCCA GAAAAGAGCA 
ATAGTAGTAA AAGGCAAAAA CTAAAAAGAT GTTTGTAATA CATTTAATTT 
AATCTTAAGT TATTAATCAT CCTTCTG

Gene models with high sequence identity

  1. AT2G34770.1 [+] show detail - fatty acid hydroxylase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther FATTY ACID HYDROXYLASE 7.4e-110
HMMPfam Fatty acid hydroxylase 0.0000000001

See the detailed result >

AT2G34770.1

Model type
Protein coding
Short Description
fatty acid hydroxylase 1
Curator Summary
encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.
Computational Description
fatty acid hydroxylase 1 (FAH1); FUNCTIONS IN: fatty acid alpha-hydroxylase activity, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, negative regulation of programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: fatty acid hydroxylase 2 (TAIR:AT4G20870.1); Has 784 Blast hits to 784 proteins in 354 species: Archae - 0; Bacteria - 388; Metazoa - 105; Fungi - 140; Plants - 78; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-B19 introduced

  • F08715 - Specific phenotypes were NOT observed.
  • F09833 - Specific phenotypes were NOT observed.
  • F24809 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

14 mutant lines found