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RAFL05-18-C17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02752)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-C17 - full reading 
GAGAGAGGAG AAGAGGAAGA GATGTTATCG TAGCCGTTGA TAATGGTCCC 
AATAGCAAAC ACGCTTTTGA TTGGGCTCTT GTTCATTTCT GTCGTCTCGC 
CGATACTCTC CATCTTGTCC ACGCCGTCTC AAGTGTTAAG AACGATGTTG 
TGTATGAGAC GAGCCAAGCC CTCATGGAGA AACTTGCTGT TGAGGCGTAT 
CAAGTTGCCA TGGTAAAGAG TGTGGCTCGT GTTGTTGAAG GCGATGCTGG 
TAAAGTAATC TGCAAGGAAG CAGAGAAAGT GAAGCCTGCT GCTGTGATTG 
TAGGCACACG AGGCAGGAGC TTAGTAAGAA GCGTGCTACA GGGGAGCGTA 
AGCGAGTATT GTTTCCACAA TTGCAAATCT GCTCCTGTCA TAATCGTTCC 
TGGAAAAGAA GCTGGAGACG AGTCGATCGT GGACTGGACA CGCTCAGAAG 
ATCCTAAACC CTGAAGAAAA AGTTCAAGTG TTGTTTCCAC GAAGACTGTT 
TTGTTTTTCA TCTTTCTGTC GCTACTGTTG CAGTCTTTGT TTCTGTATGT 
CCCTAAAAAT CTTAGATTGC TTCTTCTTCG TCTCTCTGTG TGTGTATGTG 
TTTTGATTTG GGTTTTTGTA GTTTCAAAAT TTCTGTATAA AACCTTTGCT 
CAGGAATGAA TGTATTGTAT GC

Gene models with high sequence identity

  1. AT2G21620.1 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
    E-value: 0; Score: 99.85

 

InterPro Scan Digest

Program Description E-value
superfamily Adenine nucleotide alpha hydrolases-like 1.1e-23
Gene3D Rossmann-like alpha/beta/alpha sandwich fold 4.7e-19
HMMPfam UspA 6.2e-25

See the detailed result >

AT2G21620.1

Model type
Protein coding
Short Description
Adenine nucleotide alpha hydrolases-like superfamily protein
Curator Summary
Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment.
Computational Description
RD2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to desiccation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.1); Has 1069 Blast hits to 1068 proteins in 194 species: Archae - 66; Bacteria - 229; Metazoa - 119; Fungi - 58; Plants - 583; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-C17 introduced

  • F02949 - Specific phenotypes were NOT observed.
  • F03229 - Specific phenotypes were NOT observed.
  • F05808 - rosette leaf::decreased size / cauline leaf::decreased size / sporophyte vegetative stage::decreased speed
  • F09430 - seed::increased size / seed::increased length
  • F13934 - seed::increased size
  • F14206 - Specific phenotypes were NOT observed.
  • F17225 - seed::increased size
  • F24150 - seed::increased size / seed::increased length
  • F24345 - seed::increased size / seed::increased length
  • F24725 - Specific phenotypes were NOT observed.
  • F26511 - Specific phenotypes were NOT observed.
  • F27514 - Specific phenotypes were NOT observed.
  • F27948 - Specific phenotypes were NOT observed.
  • F28508 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

15 mutant lines found