1. Home
  2. Full-length cDNAs
  3. RAFL05-18-D03

RAFL05-18-D03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01399)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-D03 - full reading 
ACCTGTTCAA CGAAACTCCT GAGCTCAGCT TCACTTTGCT CGACGTTATC 
TTCTTCGTTC AGCGACAATG GCGTCGATTA CGAACCTCGC CTCTTCTCTC 
TCTTCACTCT CGTTCTCCTC CCAAGTTTCT CAAAGACCTA ACACCATTTC 
CTTCCCCCGC GCGAATTCAG TATTCGCATT ACCGGCGAAA TCCGCACGCC 
GCGCTTCTCT ATCTATCACC GCCACGGTAT CTGCTCCACC GGAGGAGGAG 
GAGATAGTTG AACTGAAGAA ATACGTCAAA TCGAGGCTTC CCGGAGGATT 
TGCTGCTCAG AAGATTATTG GCACTGGACG ACGTAAGTGC GCAATCGCTA 
GAGTTGTTCT TCAGGAAGGT ACTGGGAAGG TTATCATCAA CTATCGTGAT 
GCCAAGGAGT ACCTTCAGGG AAATCCATTG TGGCTTCAGT ATGTTAAAGT 
ACCATTGGTG ACTTTAGGAT ATGAGAATAG CTACGACATA TTTGTGAAAG 
CCCATGGAGG CGGTCTCTCA GGTCAAGCTC AAGCAATTAC CTTGGGAGTC 
GCACGTGCAC TCCTGAAGGT AAGTGCAGAC CACAGATCGC CTTTGAAGAA 
GGAAGGTTTG CTCACTAGAG ATGCGAGAGT GGTTGAAAGA AAGAAGGCCG 
GGCTCAAGAA GGCGCGTAAA GCCCCACAAT TCTCCAAGCG TTAAGAGTTT 
TACATATCAT TGGATCAACT CTTCAAGTAG ACTCCTCTGC CTCCATTTTT 
TTTAAAAACT TTTCTTGTCT ATTATCGGTC TTTTGTTTCA TGTTAATGTT 
TATGTGTAGA CGAACTAATA CAATCTCTGT TTTGTTTGAA TGGAACGCAA 
AGTTGATATG CTTTTGTAGC AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT1G74970.1 [+] show detail - ribosomal protein S9
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
PatternScan Ribosomal protein S9, conserved site 0
HMMPanther Ribosomal protein S9 7.9e-40
superfamily Ribosomal protein S5 domain 2-type fold 1.1e-45
HMMPfam Ribosomal protein S9 9.6e-43
Gene3D Ribosomal protein S5 domain 2-type fold, subgroup 6.4e-42

See the detailed result >

AT1G74970.1

Model type
Protein coding
Short Description
ribosomal protein S9
Curator Summary
ribosomal protein S9, nuclear encoded component of the chloroplast ribosome
Computational Description
ribosomal protein S9 (RPS9); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S9, conserved site (InterPro:IPR020574); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G49080.1); Has 7998 Blast hits to 7997 proteins in 2816 species: Archae - 205; Bacteria - 5347; Metazoa - 103; Fungi - 127; Plants - 149; Viruses - 0; Other Eukaryotes - 2067 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-D03 introduced

  • F13809 - Specific phenotypes were NOT observed.
  • F21614 - rosette leaf::abnormal / stem::abnormal / stem::abnormal / rosette leaf::abnormal / rosette leaf::increased width / rosette leaf::abnormal / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

5 mutant lines found