1. Home
  2. Full-length cDNAs
  3. RAFL05-18-G15

RAFL05-18-G15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01332)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-G15 - full reading 
CTCTCAAACT CAAATCAACC TTCTTCCATT TTTCAAATTA CAAACATACA 
CAACAACAAC AAAACCTCTT ACTCACTCCA ATGGCTCGCC TTCTCTTTCG 
TCTTCTCGTA GAATCCAACA CTCCGTCTCC GGCGATTGAT AACTCCACCG 
CCGCGTTGAA TTCTGATCTC GTCGTCATCC TCGCTGCTCT CCTCTGCGCC 
TTGATTTGCG TTCTCGGCTT AATCGCCGTT TCTCGATGTG TCTGGCTCCG 
TCGTCTCGCA GCCGGAAACA GAACAGTCTC CGGATCTCAA ACTCAATCTC 
CTCAACCTCC GGTGGCAGCG GCGAACAAAG GCCTGAAGAA GAAAGTCCTT 
CAATCTCTCC CGAAGCTTAC GTTCTCGCCA GAGTCACCTG AGTCGGAGAA 
ATTCGCAGAG TGCGCGATCT GTCTAGCTGA ATTCTCTGCC GGCGACGAGC 
TCCGAGTTTT ACCGCAGTGT GGTCACGGGT TCCACGTGGC TTGCATTGAC 
ACGTGGCTAG GATCTCACTC GTCTTGCCCT TCTTGCCGTC AGATCTTGGT 
TGTTGCCAGG TGTCACAAGT GTGGAGGTTT ACCCGGTAGC TCTAGCTCCG 
GACTTGAATC CGAACCCGAA ATCGAGATCC GAATCAAGCA AGGCGAAGAT 
GACCCCAACT CCTTCTTGCC ATAATCATTT TAGTTTCCCA TTTATTTATT 
AGAAAACTCT ATAATTTAAT GCAGATCATT TTAGTGGGAT AGTGTTTAGT 
CTCTTGATGT ACATGGTTTA TTGTAATTTG TAAATGTTGT ATGAATTGGA 
AAATTTAACG ATTTGTGTAT TTGAACCTTT TATTACTTTG TGTTTATCAA 
AAACAATTGC TGAATAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G20823.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Zinc finger, C3HC4 RING-type 4.4e-07
Gene3D no description 1.6e-14
superfamily RING/U-box 5.4e-16
ProfileScan Zinc finger, RING-type 12.548
HMMSmart Zinc finger, RING-type 4.4e-08
HMMPanther gb def: T7N9.7 1.4e-24
HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 1.4e-24

See the detailed result >

AT1G20823.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G76410.1); Has 9063 Blast hits to 9039 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 637; Plants - 4964; Viruses - 26; Other Eukaryotes - 1095 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-G15 introduced

  • F17705 - seed::increased size / seed::increased length
  • F21310 - Specific phenotypes were NOT observed.
  • F23717 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found