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RAFL05-18-H06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87518)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-18-H06 - 5 prime EST 
GAAGAAACCA AAAGAGTAAA ACAAACACAG AGAAGCTTCT TCTTAAACGA 
TGCCGTACTA TACCAGAGAT GACAACGACG TCGACGATTT CGATGAGTTT 
GATCCAACGC CGTACAGTGG TGGTTACGAC ATCACGGTGA TCTACGGCCG 
TCCGATTCCA CCTTCCGATG AGACTTGTTA TCCTNTCTCA TCTGGTGTCG 
ATGATGATTT CGAATACGAG AGACCTGAAT TTACTCAGAT CCATGAGCCT 
TCTGCTTACG GTGATGAAGC TCTTAACACA GAGTACAGTA GCTATTCTCG 
ACCCAAGCCA CGACCCGCAT TTCGACCCGA TTCAGGTGGT GGTGGTCATG 
TTCAAGGTGA AAGACCAAAT CCTGGTTATG GATCTGAATC CGGTTATGGG 
AGGAAACCGG AATCTGAGTA CGGATCTGGC TATGGTGGAC AAACGGAGGT 
GGAGTATGGT CGGAGACCTG AGCNGAGTNA TGGATCTGGT TATGGTGGAA 
GGACGGA

Gene models with high sequence identity

  1. AT5G39570.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cy...
    E-value: 0; Score: 99.41

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-18-H06 - 3 prime EST 
AACACAAAAC GATAGATAGA AAACGAAACA GAGTAGCAAC AGTTACATGG 
TGACCCAATA CCACTTAAAG GTCTTATTAT GAACCAGTAC GAAGACTCTG 
TAGTAATAAT ACAGAGATTC AAACAAACAC AACACCAACG TCGGAAGATA 
TTATGTAGAA AGGTATGTGA CTTAGCTCTT TATTTAGTAG ATTTTTGAGG 
CTAAGCAAAC ACACATTCTC ATTACACTCT CTAGCACAGA GAGGGTTTAG 
TTTACTCATC GTCTTCGTCA CGACGCTTCT GGTGGTGATG CTTGTGACGG 
TGCTTCTTCT TCTCCTCATC CTCATCAGAG TCATTGCCAC CATATTTCTT 
GCGGCCATAG CTCCCTTCCT CATCATCACC AGAACCAGAA CGGTTCCTAC 
GCTGCTCATC ATCATCATCG TCATTGCCAC GGCCATAGCT AGGCTGCTTC 
CTGTAACTCC CCTCTTCCTG TTCCTCAGAC CTCCCATAAC TAGGCTTCCT 
GTAACTTCCC TCCTCCTGTT CCTCAGATCT TCCATAGCTA GGCTTAATGT 
AACTCTCCAC CTGATCATCA GACCTCCCAT AACTAGGTTT CCTGTAACTT 
CCTTCCTCTT GTTCCTCAAA TC

Gene models with high sequence identity

  1. AT5G39570.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cy...
    E-value: 0; Score: 100.00

AT5G39570.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-H06 introduced

  • F30524 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found