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RAFL05-18-H10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01330)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-H10 - full reading 
GCTCACATCG GAAACCCTAA ATCTCCACTC TCTCGCGCCT TTTACCCCTT 
CTCAGAATCT TAACCATGGC GGCGACGAGC GAGCACACCA TCTTGCAATT 
TGTGTCTCCG TCATCAACGG CGTCCGCTAC AACCTCTGTA CTCACGGCGA 
GGATCCACCC TCTCGTTATC TTTAACGTCT GTGATTGCTT CGTGAGACGT 
CCTGACTCAG CTGAACGAGT CATCGGAACT CTCCTCGGAT CTATCTTACC 
TGACGGAACC GTCGATATCC GCAATTCATA CGCCGTCCCT CACAATGAAT 
CATCCGATCA GGTTGCTGTG GATATTGATT ACCACCACAA TATGTTAGCT 
TCACACCTTA AGGTGAATTC AAAGGAAACT ATTGTCGGCT GGTATTCAAC 
TGGTGCTGGG GTTAATGGCG GTAGTTCGCT GATTCATGAT TTCTATGCTA 
GAGAAGTACC CAACCCAATT CACCTAACTG TGGATACTGG GTTTACTAAT 
GGTGAGGGTA CTATCAAAGC TTTTGTCTCT TCAAACCTCT CACTCGGTGA 
TCGACAACTC GTTGCACATT TTCAAGAGAT TCCTGTTGAT CTCCGCATGG 
TTGATGCTGA GAGAGTCGGA TTCGATGTAC TTAAGGCAAC ATCTGTTGAC 
AAACTCCCAA ATGACTTGGA AGGAATGGAG TTAACAATGG AGAGGCTGTT 
AACTCTAATC AACGATGTCT ACAAATATGT TGACAGTGTC GTGGGAGGTC 
AAATAGCTCC AGACAACAAC ATTGGACGAT TCATTGCAGA TGCAGTAGCC 
TCCCTTCCCA AGTTACCTCC ACAAGTCTTC GATAACCTCG TGAATGATAG 
TCTCCAGGAC CAATTGCTTC TGTTGTACCT ATCAAGCATA ACAAGGACAC 
AGTTGAGTCT AGCGGAGAAG CTAAACACAG CTGCTCAAAT GCTATAATAA 
GCTTGGAAAC ACAAGGTTTT GCTAAAAATG GGGAATGCTG CTTTTTTGGT 
TTCGAATTTT CTTTTAACAA GTTTATGTAA GAATCAGCTT CTTGTTGTAG 
TGTTCCTAAA TTGCAAGTTT AAGAAAGACA AAATGCTCTG TTTCGTGAAT 
TAAGGTCTTT AAAAGGGATT TTTAGTTGGT GTGCCTAATT TTAAACAATA 
TACATATAAA AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT2G39990.1 [+] show detail - eukaryotic translation initiation factor 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Mov34/MPN/PAD-1 2.3e-36
HMMPfam Mov34/MPN/PAD-1 1e-19
HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 3F, 5.4e-108
HMMPanther EIF3F-RELATED 5.4e-108

See the detailed result >

AT2G39990.1

Model type
Protein coding
Short Description
eukaryotic translation initiation factor 2
Curator Summary
translation initiation factor eIF2 p47 subunit homolog
Computational Description
eukaryotic translation initiation factor 2 (EIF2); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: pollen germination, translational initiation, embryo development; LOCATED IN: eukaryotic translation initiation factor 3 complex, nucleus, membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: Mov34/MPN/PAD-1 family protein (TAIR:AT3G11270.2); Has 1103 Blast hits to 1103 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 465; Fungi - 269; Plants - 187; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-H10 introduced

  • F13819 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::abnormal

Mutant lines with disrupted or induced

2 mutant lines found