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  3. RAFL05-18-H11

RAFL05-18-H11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07406)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-H11 - full reading 
TGCGGTTGCC GCACCTGCTT CGCTTCTCCT CTCTCGCTCT CTACTCAGGA 
CTCGTTTACT CTTTCAAAGC TAAGCTTTCA AGATGCAAAA CGAAGAGGGT 
CAGGTCACTG AGCTTTACAT TCCTAGGAAA TGTTCTGCTA CTAACCGGTT 
GATCACATCC AAGGATCATG CCTCTGTTCA GCTCAACATT GGTCATTTAG 
ATGCTAATGG CTTGTACACC GGACAGTTCA CAACCTTTGC TCTCTGCGGT 
TTTGTCCGTG CTCAGGGAGA CGCTGACAGT GGTGTCGACA GGTTGTGGCA 
GAAGAAGAAG GTTGAAGCCA AACAAAACTA AGAGCTTAAT CTGTCTTGTT 
TTTTGTCGAA TCTTGTTTTT TTTTTTCCGA AAGATTGCCT CATACTGAAG 
TAATGATTTT GGCTTTGGGT CGTGGAACTT AACTTAAATG CTTTTGTGCA 
CCATGTCTTC TAATTTTTCA CCAGTTCGAT ATAGTAAAAA AAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT5G27700.1 [+] show detail - Ribosomal protein S21e
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Ribosomal protein S21e, conserved site 0
HMMPIR Ribosomal protein S21e 2.6e-50
HMMPanther Ribosomal protein S21e 5.8e-44
BlastProDom Ribosomal protein S21e 3e-23
HMMPfam Ribosomal protein S21e 2.6e-38

See the detailed result >

AT5G27700.1

Model type
Protein coding
Short Description
Ribosomal protein S21e
Computational Description
Ribosomal protein S21e ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e, conserved site (InterPro:IPR018279), Ribosomal protein S21e (InterPro:IPR001931); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21e (TAIR:AT3G53890.2); Has 660 Blast hits to 660 proteins in 258 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 137; Plants - 120; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-H11 introduced

  • F06036 - Specific phenotypes were NOT observed.
  • F15321 - Specific phenotypes were NOT observed.
  • F16625 - Specific phenotypes were NOT observed.
  • F20911 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

14 mutant lines found