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  3. RAFL05-18-H13

RAFL05-18-H13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01396)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-H13 - full reading 
GAGAACTCTG CTCTTCTTCT TCTTCCTCCG CCATAGCTAC AATGCTTAGT 
CTCTCAATCG CTACGCCGGG GACGGCGGCG ATTTTTCGTA GAGGAACTGC 
TTCGGCGACT TCAACTTCGT CTTCATTCCA TGGTGTCAGA ATCCAGCACC 
AGGTTTCTGC TCGCGTCCCC GCGGCGGCGA CGATATCGTC GTCGTCTCCT 
AAACCGTCGG TGGTGATGAT GTCGAAAAGA GAGGCGGAAT TGAAAGAGAT 
AAGATCGAAG ACGACGGAGC AGTTACAAGA GGAGGTTGTT GACCTTAAAG 
GTGAGCTCTT TATGCTTCGT CTCCAGAAAT CGGCAAGGAA TGAGTTCAAA 
TCTAGCGACT TTCGTCGTAT GAAGAAACAA GTTGCTCGGA TGTTGACGGT 
TAAAAGAGAG AGGGAGATCA AAGAAGGGAT AAAGAAAAGG TTGTCGAGGA 
AACTTGACAG ACAATGGAAG AAAAGCATAG TACCAAGACC ACCTCCGTCT 
CTGAAGAAAC TTCAAGAAGA AGAAGCTGCA GAAGAAGCAG CTGAAGCTGC 
TAAATCTGCT TGAAAAAACC CGCTATTGAT TTATGGTCTC TTCCTTGTTG 
TTTCCTCGAG ATGTTGTTAA TCTCTGTTAT TTGTTGCTGA ACCATCTTGT 
ATTTGTTTTT CTTTTGGTGT AAACACTTTC CTTATCAAGT AGTTTACATG 
AATCCCTTAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT5G65220.1 [+] show detail - Ribosomal L29 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Ribosomal protein L29 1.3e-06
HMMPfam Ribosomal protein L29 1.6e-17
superfamily Ribosomal protein L29 1.9e-13
HMMTigr Ribosomal protein L29 5.3e-16

See the detailed result >

AT5G65220.1

Model type
Protein coding
Short Description
Ribosomal L29 family protein
Computational Description
Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, nucleoid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-H13 introduced

  • F09939 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found