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RAFL05-18-I12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02760)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-I12 - full reading 
GGACCAAGCT GCTTCTTCTC CATCTATCCA ACATCTCAAA TCTCAGTAAT 
CTTGTTCCTT CGATTCTGTT TTGGACGTTT GTAATGGATT CTCAGGACAT 
CAGATACCGC GGCGGAGACG ACAGAGACGC TGCAACGACG GCTATGGCCG 
AGACAGAGAG GAAAAGCGCT GACGACAACA AAGGAAAACG CGATCAAAAG 
AGGGCGATGG CGAAACGTGG TCTCAAGTCT CTGACGGTAG CGGTTGCGGC 
TCCTGTGCTC GTGACGCTCT TCGCTACGTA TTTCCTCGGC ACAAGCGACG 
GATACGGGAA TCGAGCTAAG TCCTCGTCGT GGATCCCACC TCTGTGGCTC 
CTACACACAA CGTGTCTCGC TTCTAGTGGT CTGATGGGTT TGGCTGCGTG 
GCTTGTATGG GTTGACGGTG GCTTCCACAA GAAGCCCAAT GCTCTGTATC 
TTTACTTAGC TCAGTTTTTG CTCTGTTTGG TTTGGGATCC GGTTACGTTC 
CGCGTCGGGT CGGGAGTAGC GGGGCTTGCG GTGTGGTTGG GTCAATCGGC 
TGCGTTATTC GGATGCTACA AGGCCTTTAA TGAGATAAGT CCGGTCGCTG 
GTAATCTGGT AAAGCCGTGT TTGGCTTGGG CTGCCTTTGT AGCCGCTGTT 
AATGTAAAGC TTGCAGTCGC GTGAGATCTG TAAACGCTAT ACGATGATGT 
TTGTAGAGTC TGAGTCATAT GAGTGTTTCT TGTTGTTTTT GTTTTTTGTG 
ATATATACCA TAAAAGATGT CTTTGCGATC CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT2G47770.1 [+] show detail - TSPO(outer membrane tryptophan-rich sensory protein)-related
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther TspO/MBR-related protein 8.9e-27
HMMPfam TspO/MBR-related protein 2.2e-21

See the detailed result >

AT2G47770.1

Model type
Protein coding
Short Description
TSPO(outer membrane tryptophan-rich sensory protein)-related
Curator Summary
Encodes a membrane-bound protein designated AtTSPO (Arabidopsis thaliana TSPO-related). AtTSPO is related to the bacterial outer membrane tryptophan-rich sensory protein (TspO) and the mammalian mitochondrial 18 kDa Translocator Protein (18 kDa TSPO), members of the TspO/MBR domain-containing membrane proteins. Mainly detected in dry seeds, but can be induced in vegetative tissues by osmotic or salt stress or abscisic acid treatment. Located in endoplasmic reticulum and the Golgi stacks.
Computational Description
TSPO(outer membrane tryptophan-rich sensory protein)-related (TSPO); CONTAINS InterPro DOMAIN/s: TspO/MBR-related protein (InterPro:IPR004307); Has 567 Blast hits to 567 proteins in 188 species: Archae - 24; Bacteria - 226; Metazoa - 151; Fungi - 6; Plants - 53; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-I12 introduced

  • F17421 - Specific phenotypes were NOT observed.
  • F21237 - Specific phenotypes were NOT observed.
  • F23125 - Specific phenotypes were NOT observed.
  • F28547 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found