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  3. RAFL05-18-J06

RAFL05-18-J06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02762)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-J06 - full reading 
TTTGTTTTGA TTTCCTCTCT CACTCTGCAC ACGAAGGCGA GAGAGAGAGA 
GAAAGAAAAA AGCGAAGAAT ACGCAGAATC CATCCAATTT AGGGTTAGGG 
CTGCCCCTAA TCTGGAAACC TTTGCCTCGT TTCTGATCTG TTTTCCGGAT 
CCGACTTGAA GGAAAGAAGA CGACGACGCA CTACCAAAAA CATGGGCGCG 
AATTCGCTTC CAACGGATGC AACCCTCGAT CTAGATGAGC AGATCTCGCA 
GCTCATGCAG TGCAAGCCTC TCTCCGAGCA ACAGGTCAGA GCATTATGTG 
AGAAAGCTAA GGAGATCTTA ATGGATGAAA GCAACGTTCA GCCTGTTAAA 
AGCCCTGTGA CAATCTGCGG TGATATTCAT GGACAGTTCC ATGATCTTGC 
AGAGCTTTTC CGTATTGGGG GAAAGTGTCC TGATACCAAC TATCTGTTTA 
TGGGAGACTA TGTCGACCGT GGATATTATT CTGTGGAAAC TGTTACGCTG 
TTGGTTGGCT TGAAAGTACG GTATCCACAG CGAATCACTA TTCTTAGAGG 
AAACCATGAA AGTCGTCAGA TTACTCAGGT TTATGGATTT TATGATGAAT 
GTCTGCGAAA GTATGGCAAT GCAAATGTTT GGAAGATATT TACAGACCTC 
TTTGACTATT TCCCACTGAC AGCCTTGGTG GAGTCGGAAA TATTCTGCCT 
TCACGGTGGA TTATCACCAT CCATCGAGAC CCTTGACAAC ATTAGGAACT 
TTGATCGGGT TCAAGAAGTT CCACATGAAG GGCCTATGTG TGACTTATTA 
TGGTCTGATC CTGATGACAG ATGTGGCTGG GGAATCTCTC CTCGTGGTGC 
TGGATATACA TTTGGTCAGG ATATTTCGGA ACAATTCAAT CACACTAACA 
ACTTAAAGCT GATCGCCCGA GCGCATCAGC TCGTTATGGA TGGATTCAAT 
TGGGCACACG AGCAAAAAGT GGTTACTATA TTCAGTGCAC CAAACTATTG 
CTATCGCTGT GGAAACATGG CCTCAATTCT TGAGGTCGAT GACTGCAGGA 
ACCACACGTT CATTCAGTTT GAACCAGCAC CGAGGAGAGG AGAGCCAGAT 
GTAACCCGAA GGACACCTGA CTATTTCCTT TGAAGATACT CAGCTCCTCC 
TGCAGCTTCC GGTTGTTGGT TTTTGAAGAT CTCTGCTTAT TCCATTTGGT 
TCAACGCATT TGTGTTCCAG GTTGCTTCTC TTTAAAATCA ATTTAGCCCT 
CTCCCTTGGA ATAGTGTAAT ATAGGCAAAG AGGTCAATGA ACTTTAAAAC 
CTCTCATGAA CATGTGTTTG GCTGAACTTA TTAGCTCCCT TCTGCATCAG 
AATCTGTTTA TTGTGAGATA TTTTTTCGAT TTATTTCACG TAATTTTTCC 
TAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT3G58500.1 [+] show detail - protein phosphatase 2A-4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
Gene3D no description 4.8e-126
HMMSmart Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2.2e-165
superfamily Metallo-dependent phosphatases 3e-127
HMMPfam Metallophosphoesterase 6.5e-42
PatternScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 0
HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE PP2A 1.5e-264
HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.5e-264

See the detailed result >

AT3G58500.1

Model type
Protein coding
Short Description
protein phosphatase 2A-4
Curator Summary
Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
Computational Description
protein phosphatase 2A-4 (PP2A-4); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-3 (TAIR:AT2G42500.1); Has 6816 Blast hits to 6628 proteins in 481 species: Archae - 80; Bacteria - 203; Metazoa - 2402; Fungi - 1409; Plants - 984; Viruses - 3; Other Eukaryotes - 1735 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-J06 introduced

  • F20532 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found