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RAFL05-18-J16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87519)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-18-J16 - 5 prime EST 
GAAAGAGAAG TCGAAATGCC AGTTTCAGCT CCATCTCCGC CTCGTCTTCA 
TTCTCCGTTC ATTCACTGTC CCATCAATTT CACTCCTTCT TCTTTCTCGG 
CGAGGAATCT CCGGTCGCCG TCAACATCTT ATCCCCGAAT CAAAGCTGAA 
CTCGATCCCA ACACGGTAGT CGCGATATCT GTAGGCGTAG CAAGCGTCGC 
ATTAGGAATC GGAATCCCTG TGTTCTACGA GACTCAAATC GACAATGCGG 
CTAAGCGAGA GAATACTCAA CCTTGTTTTC CCTGTAATGG CACCGGAGCT 
CAGGAGGATC CAAAAGAAAA GAGGAAAAAA TGGACTATAT GTATGGACCA 
GGGAGACACC ATCTGTTTGT ACCAGGACCA GTGAACATAC CGGAACCGGT 
AATCCGGGCG ATGAACCGGA ACAACGAGGA TTACCGGTCA CCAGCCATTC 
CGGCGCTTAC GAAAACATTG TTGGAGGATG TTAAGAAGAT ATTCAAGACC 
ACATCAGGGA CACCTTTTCT GTTTCCCACG ACCGGGACTG GTGCTTGGGA 
GAGTGCCTTG ACCAACACGT TATCTCCTGG AGACAGGATT GTTTCGTTTC 
TGATTGGACA ATTTAGCTTG CTCTGGATTG ACCAGCAGAA GA

Gene models with high sequence identity

  1. AT2G13360.2 [+] show detail - alanine:glyoxylate aminotransferase
    E-value: 0; Score: 100.00

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-18-J16 - 3 prime EST 
CAATAAGTTT GTTGGAGATA GCAAATAAAA ACATAGATAA TGTAGTAAAA 
ATATAGATGA AGAAAAGAGA AAACATGAGA GTTTGTTTAC ATTGAGAGGA 
AGAGAAAGAA AGAGAAGGAC CACATGGATT AGATTCTAGA GGGAATGAGA 
GGAATGTGGT GCTGAAGATA AGTAGAGGCA GCTGCAACTC CACTTCCCAT 
TACAACTGGG TATCCAACAT CCTTCAGTAT CATCTCCACT CCCGCAAGAC 
ACCCGAGAAG TTGCAACTCA TTCACATTTC CTAGGTGTCC AATTCTGAAA 
ACCTTTCCAG CCACTTTGTT GAGACCAAGA CCAAGACTTA AGTTGTACCT 
CTGCCATGCC CTTCTCACAA TCTCCGAACC GTCTATATGC GGAGGCACCA 
TAACTGCTGT CACTGTGTTA CTTATCCATT CCTCCTTCTG TGTGCAGTTT 
TTCAGCCCCC ATGCTTCCAC CGCAAGCCTG GTGGCCTTTC CCAAACGAGC 
ATGGCGGGCG ATGATGTTCT CAAGTCCTTC CTCAAAGATA AGATCAAGAG 
CAGCTCTAAG ACCGTAGAGA AGTTGAATGG AAGGTGTGTA TGGCCAATA

Gene models with high sequence identity

  1. AT2G13360.2 [+] show detail - alanine:glyoxylate aminotransferase
    E-value: 0; Score: 100.00

AT2G13360.2

Model type
Protein coding
Short Description
alanine:glyoxylate aminotransferase
Curator Summary
Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration.
Computational Description
alanine:glyoxylate aminotransferase (AGT); FUNCTIONS IN: serine-pyruvate transaminase activity, serine-glyoxylate transaminase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, peroxisome, plasma membrane, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Aminotransferase class-V pyridoxal-phosphate binding site (InterPro:IPR020578), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); Has 6407 Blast hits to 6405 proteins in 1610 species: Archae - 309; Bacteria - 3905; Metazoa - 186; Fungi - 125; Plants - 148; Viruses - 0; Other Eukaryotes - 1734 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-J16 introduced

  • F02346 - seed::increased size / seed::increased length
  • F04614 - Specific phenotypes were NOT observed.
  • F14515 - Specific phenotypes were NOT observed.
  • F20003 - Specific phenotypes were NOT observed.
  • F23819 - Specific phenotypes were NOT observed.
  • F25717 - Specific phenotypes were NOT observed.
  • F26323 - Specific phenotypes were NOT observed.
  • F28020 - whole plant::decreased height / stem internode::decreased length / stem::abnormal
  • F28836 - Specific phenotypes were NOT observed.
  • F30048 - Specific phenotypes were NOT observed.
  • F30245 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found