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  3. RAFL05-18-J21

RAFL05-18-J21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02763)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-J21 - full reading 
ATTACAAAAC AAAAACAAAC ACAATGAAAG GAACACTTTC AGTTTTGTGT 
CTTGTACTTC TGGTTTCGGT TTTGGAAGCA GCAGTAACAA AACCAAAATT 
TGGAGACTTC ATCGGGTGCC TTCGCTATCG TACTAGTCCG AAGAATCCAA 
TCACCGATGC CATCTCCTTC GCCGATAACA CCACCACCTT CTTGTCTTCT 
TACGTGTCAT ACACTAAAAA CAAAAGGTTC TCGACCCCTA ATTATAGAAA 
GCTACTAGCC ATCGTGGCCG CAAAACATGT ATCTCATGTT CAGGCCACGG 
TGGTCTGCGC AAAGTCCAAT GGTATCCAGC TCCGTATACG AAGCGGCGGT 
CATGACTATG AAGGCCTTTC TTACATGTCG TCTGTGCCAT TTGTTATTCT 
CGATATGTAC AATTTGAGGT CTATTACTGT TGACGTGTCA AGCAAGAAAG 
CCTGGATTCA AGCTGGTGCG ACCTTGGGAG AGCTCTACAC AAACGTCAAT 
GACGTAAGCC AAACACTAGC TTTCCCGGCT GGCGTTTGCG CTACCGTAGG 
AGCTGGTGGG CACATAAGTG GTGGAGGGTA TGGAAATCTA ATGAGAAAAT 
ACGGAATCAC TGTGGATCAT GTCATTGATG CTCAAATAAT TGATGTCAAC 
GGCAAGCTCT TGAATCGAGC TACCATGGGA GAAGATCTCT TTTGGGCAAT 
CCGTGGCGGT GGCGGTGGGA GTTTTGGAGT TATCCTCTCT TGGAAAATCA 
ACCTCGTCGA TGTTCCAAAG ATCGTGACAG TATTTAAGGT TAACAAAACA 
CTGGAACAAG GAGGCACTGA TGTTCTCTAC AAGTGGCAGC TTGTCGCTAG 
CAAATTCCCT GAAAGTCTTT TCGTGAGAGC AATGCCTCAG GTAGCAAATG 
GAACAAAACG CGGGGAGAGA ACCATCACTG TTGTATTCTA TGCTCAGTTC 
TTGGGTCGAA CCGATGCGCT GATGGCTATA ATGAACCAAA ACTGGCCTGA 
ACTAGGGCTA AAACATGAAG ATTGTCAAGA AATGAGCTGG CTTAACTCAA 
CGTTGTTTTG GGCAGATTAT CCAGCCGGTA CCCCGACGAG CATTCTTCTA 
GATAGACCGT CGAGTCCAGG AGATTTTTTC AAAAGTAAAT CAGATTATGT 
CAAAAAACCA ATCCCCAAAG AAGGATTGGA GAAGCTTTGG AAGACAATGT 
TGAAATTCAA CAATAATATT GTGTGGATGC AATTCAACCC TTACGGTGGA 
GTGATGGACC GGATTCCAGC AACGGCCACA GCGTTTCCTC ACAGAAAAGG 
AAACTTGTTC AAGATTCAAT ACTTTACGAC ATGGTTTAAC GCAAACGCCA 
CAATGAGTAG CCTGAGTCAA ATGAAGGAGC TTTACGAGGT TGCTGAACCG 
TACGTGTCAA GTAACCCGAG AGAGGCCTTT TTTAATTACA GAGATATCGA 
TGTTGGAAGC AATCCGAGTG GTGAGACAAA CGTGGATGAA GCTAAGATCT 
ATGGATCCAA GTATTTCTTG GGGAATTTGA AGAGATTGAT GGATGTTAAA 
GCTAAGTATG ATCCTGATAA TTTCTTCAAA AACGAACAGA GCATTCCTCC 
GGTTCGTGTA ATGTAGTGAT ATTTCTGTTT TATAAGTTTA TTTATCAAGT 
TCAATAAGCT ATGTGGGCAT GTGTTATATA GTCTATACTG TATGTAATTT 
TCATAATTGT TTCATTTGCA TTAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT1G26390.1 [+] show detail - FAD-binding Berberine family protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMPfam FAD linked oxidase, N-terminal 3.9e-26
HMMPfam Berberine/berberine-like 8.6e-20
ProfileScan FAD-binding, type 2 16.911
superfamily FAD-binding, type 2 2.8e-50

See the detailed result >

AT1G26390.1

Model type
Protein coding
Short Description
FAD-binding Berberine family protein
Computational Description
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4431 Blast hits to 4295 proteins in 635 species: Archae - 59; Bacteria - 1880; Metazoa - 8; Fungi - 1648; Plants - 659; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-J21 introduced

  • F10626 - rosette leaf::present in greater numbers in organism / stem::decreased thickness / sporophyte vegetative stage::decreased speed / stem::abnormal

Mutant lines with disrupted or induced

1 mutant line founds