1. Home
  2. Full-length cDNAs
  3. RAFL05-18-K12

RAFL05-18-K12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87521)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-18-K12 - 5 prime EST 
GATAACACAC ACTCGCTTGT TCACGCACAA CAAAAAGCAA GAATATATAC 
CACTTTGTGA ACTTCAGAGA TCCTATAGCA ATGGCGAACC TACCGATTCT 
TTTGGATTAC TGGCCAAGTA TGTTCGGGAT GAGGGCTAGA GTTGCGTTGC 
GAGAGAAAGG TGTTGAGTTT GAATACAGAG AGGAAGATTT CTCGAACAAG 
AGCCCTTTAC TCCTCCAGAG TAATCCCATT CACAAGAAAA TCCCGGTTCT 
GGTCCACAAC GGTAAACCGG TATGTGAATC TCTTAACGTT GTCCAGTACG 
TCGACGAGGC TTGGCCCGAG AAGAACCCGT TCTTCCCTTC CGATCCTTAC 
GGGAGAGCTC AGGCTCGATT CTGGGCTGAT TTCGTGGACA AGAAGTTCAC 
CGACGCCCAA TTCAAGGTAT GGGGGAAGAA AGGTGAGGAA CAAGAAGCAG 
GCAAGAAGGA ATTTATTGAG GCAGTGAAGA TTCTTGAATC TGAGCTAGGA 
GATAAACCTT ACTTTGGTGG AGATAGCTTT GGGTATGTAN ACATTTCCTT 
GATTACATTC TCGAGTTGGT TCCAAGCCTA TGANAAGTTT GGTAACTTTA 
GCATCGGAGT CAGAGAGTNC GAAACTGATC G

Gene models with high sequence identity

  1. AT1G78370.1 [+] show detail - glutathione S-transferase TAU 20
    E-value: 0; Score: 99.37

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-18-K12 - 3 prime EST 
CGAAACAAAT TTTATTTAAA TTCCATACTT AGGATGCATA AAAACCACAA 
CACACATTCA CTAAGGCTCT CTCGCATTAT TAGGGGAAAA AAAAAAACAA 
AGACAAAAAC AGAACACAGC TTAGCAACAA GAGAACAACA AGATTATTCA 
AATCAGAGAT TGTTCTTCCT ATACTCAGCA GCATATGCAA CAATCTTCTC 
AGAGTCAGGG AGAGACTTAG ACACACTCTC TTTCTCCATG CACCGCTTTG 
CCCAAGCGAT CAGTTTCGGA CTCTCTGACT CGATGCTAAA GTTACCAAAC 
TTCTCATAGG CTTGGAACCA ACTCGAGAAT GTAATCAAGG AAATGTCTAC 
ATACCCAAAG CTATCTCCAC CAAAGTAAGG TTTATCTCCT AGCTCA

Gene models with high sequence identity

  1. AT1G78370.1 [+] show detail - glutathione S-transferase TAU 20
    E-value: 0; Score: 100.00

AT1G78370.1

Model type
Protein coding
Short Description
glutathione S-transferase TAU 20
Curator Summary
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
Computational Description
glutathione S-transferase TAU 20 (GSTU20); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 19 (TAIR:AT1G78380.1); Has 7354 Blast hits to 7257 proteins in 1180 species: Archae - 0; Bacteria - 3234; Metazoa - 910; Fungi - 219; Plants - 2135; Viruses - 0; Other Eukaryotes - 856 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-K12 introduced

  • F05903 - cauline leaf::present in greater numbers in organism / cauline leaf::abnormal / stem internode::decreased length
  • F11503 - Specific phenotypes were NOT observed.
  • F12712 - Specific phenotypes were NOT observed.
  • F15104 - Specific phenotypes were NOT observed.
  • F17108 - Specific phenotypes were NOT observed.
  • F18905 - Specific phenotypes were NOT observed.
  • F19436 - Specific phenotypes were NOT observed.
  • F26450 - Specific phenotypes were NOT observed.
  • F30037 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found