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RAFL05-18-M18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87522)

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-18-M18 - 3 prime EST 
ACATAACACA AACATCTCAG AACATAAAAA GAGCCAGATG CTCATTACAC 
ACTCATGTAA GTAAACAACA CACATCGCAG GACGTACATA CATAAAAAGC 
ACAATACAAC GACCGAATGC GACCTGCGTT ACAAACCCTC ATTATTTTTA 
TTTAATATGT ATACACGATT GTTCGAAGCT TAACGGCCAC CACCGGGAAG 
CTTTTCCTTG ATCTTG

Gene models with high sequence identity

  1. AT5G66400.2 [+] show detail - Dehydrin family protein
    E-value: 7e-115; Score: 99.54

AT5G66400.2

Model type
Protein coding
Short Description
Dehydrin family protein
Curator Summary
Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.
Computational Description
RESPONSIVE TO ABA 18 (RAB18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, response to water deprivation, response to 1-Aminocyclopropane-1-carboxylic Acid, response to abscisic acid stimulus, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: dehydrin xero 1 (TAIR:AT3G50980.1); Has 55408 Blast hits to 21272 proteins in 1590 species: Archae - 46; Bacteria - 19188; Metazoa - 16568; Fungi - 3087; Plants - 7219; Viruses - 590; Other Eukaryotes - 8710 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-M18 introduced

  • F04007 - Specific phenotypes were NOT observed.
  • F20225 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found