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  3. RAFL05-18-N22

RAFL05-18-N22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17128)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-N22 - full reading 
GAAAACAAAA AAAAATGGCT TCCACTGCTC TCTCAAGCGC CATCGTCGGA 
ACTTCATTCA TCCGTCGTTC CCCAGCTCCA ATCAGTCTCC GTTCCCTTCC 
ATCAGCCAAC ACACAATCCC TCTTCGGTCT CAAATCAGGC ACCGCTCGTG 
GTGGACGTGT CACAGCCATG GCTACATACA AGGTCAAGTT CATCACACCA 
GAAGGTGAGC TAGAGGTTGA GTGTGACGAC GACGTCTACG TTCTTGATGC 
TGCTGAGGAA GCTGGAATCG ATTTGCCTTA CTCTTGCCGT GCTGGTTCTT 
GTTCGAGCTG TGCTGGTAAA GTTGTGTCTG GATCTGTTGA TCAGTCTGAC 
CAGAGTTTCC TTGATGATGA ACAGATTGGT GAAGGGTTTG TTCTCACTTG 
TGCTGCTTAC CCTACCTCTG ATGTTACCAT TGAAACCCAC AAAGAAGAAG 
ACATTGTTTA AGCCTCACCT ACTCACCAGC TTTTGATGGT TTAAAAATCA 
TGTCTTTATA AATTTCACAT TTTGGGTTGA GTTTGTTGTT ACTAAAAACT 
ATTGTTATCT GTTGTTATTG TTCCTGGTTT GGCTCACCAT CAATCGATGA 
CATTTTAAAC CAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G60950.1 [+] show detail - 2Fe-2S ferredoxin-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Ferredoxin [2Fe-2S], plant 6.3e-58
HMMPfam Ferredoxin 1.5e-20
Gene3D Beta-grasp fold, ferredoxin-type 4.6e-31
PatternScan 2Fe-2S ferredoxin, iron-sulphur binding site 0
superfamily Ferredoxin 4.5e-32
ProfileScan Ferredoxin 13.455

See the detailed result >

AT1G60950.1

Model type
Protein coding
Short Description
2Fe-2S ferredoxin-like superfamily protein
Curator Summary
encodes a major leaf ferredoxin
Computational Description
FED A; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: photosynthetic electron transport chain, response to light stimulus; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ferredoxin 1 (TAIR:AT1G10960.1); Has 7652 Blast hits to 7650 proteins in 1365 species: Archae - 135; Bacteria - 5670; Metazoa - 7; Fungi - 12; Plants - 625; Viruses - 5; Other Eukaryotes - 1198 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-N22 introduced

  • F14543 - Specific phenotypes were NOT observed.
  • F29547 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found