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RAFL05-18-O03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01315)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-O03 - full reading 
CTCTTCCTCT CTTCTCTCTC AAATCTAGAA AGAGAAAAAG TCTTAAATTT 
GTCTCATTTA TGCGATAAGA ACCACAATTC CTCTATCAAA ATCTCTCTCT 
CTGACATACC CAGTTGGAAA AATTCAATCT TTTATCCCTA AGATTCGATC 
TTTCTTCTTG GGAAGTTGAT AAATGTTCAA GGAAACATAA AAAAGAGAAG 
ATTTTTGAAT AAAGGTTGAA GAAAAATGCA GGATCCAGCA GCATATTACC 
AGACGATGAT GGCGAAGCAA CAACAACAAC AACAACCACA GTTTGCAGAG 
CAAGAACAGT TAAAGTGTCC TCGTTGTGAC TCACCAAACA CTAAATTCTG 
TTACTACAAC AACTACAATC TCTCACAGCC TCGTCACTTT TGCAAAAGCT 
GTCGTCGTTA CTGGACTAAA GGCGGCGCTC TCCGTAACGT TCCCGTCGGT 
GGTGGTTCTC GTAAGAACGC AACCAAACGA TCCACTTCTT CTTCTTCTTC 
TGCTTCCTCT CCTACCAACA GTAGCCAAAA CAAGAAGACG AAAAACCCGG 
ATCCGGATCC TGATCCACGT AATTCTCAAA AACCGGATTT GGATCCGACC 
CGGATGCTTT ACGGGTTTCC GATCGGTGAC CAAGACGTGA AGGGTATGGA 
GATTGGTGGA AGCTTTAGCT CGTTGTTGGC GAATAATATG CAGCTTGGTC 
TTGGAGGAGG AGGGATCATG CTTGACGGGT CGGGTTGGGA TCATCCGGGT 
ATGGGTTTGG GTTTGAGGAG AACCGAACCG GGTAATAATA ATAATAACCC 
ATGGACCGAT CTGGCTATGA ACAGAGCGGA GAAAAACTGA AGAAGAAAAG 
AAGAGAGGGG TATTTTGGTA AATTATAGCA AACTGATTTT GGGTGACTTG 
AGCCATCACG TAGACACTGA ACAGTTTCGA TCATGTTTAT GTCATTTTGG 
TAATATTATT ATTATTCCTC CTCCTACTTT ATTTCTATTT ATATAATCGG 
TTTTGTCGTA ATTTTAATCC TGTGTAATAG AAAGAAATTT CTCTAAAAAA 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT3G21270.1 [+] show detail - DOF zinc finger protein 2
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
ProfileScan Zinc finger, Dof-type 29.255
HMMPfam Zinc finger, Dof-type 2.4e-37
PatternScan Zinc finger, Dof-type 0
BlastProDom Zinc finger, Dof-type 2e-23

See the detailed result >

AT3G21270.1

Model type
Protein coding
Short Description
DOF zinc finger protein 2
Curator Summary
Encodes Dof zinc finger protein adof2.
Computational Description
DOF zinc finger protein 2 (DOF2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DOF zinc finger protein 1 (TAIR:AT1G51700.1); Has 1111 Blast hits to 1102 proteins in 62 species: Archae - 0; Bacteria - 5; Metazoa - 2; Fungi - 4; Plants - 1092; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-O03 introduced

  • F14518 - seed::increased width
  • F15718 - rosette leaf::epinastic / rosette leaf::abnormal / stem::present in fewer numbers in organism
  • F19408 - Specific phenotypes were NOT observed.
  • F27245 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found