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  3. RAFL05-18-O17

RAFL05-18-O17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07420)

full reading [+] show sequence

Nucleotide sequence: RAFL05-18-O17 - full reading 
ATAGTGTAAA GAAAACAAAA CCACTTTCTA GTTCTTAAAG AAACTAGAAA 
TCCATGGACC CGTCTCGTCA TACTCATGTG ATGCTCGTAT CTTTCCCCGG 
CCAAGGTCAC GTAAACCCTC TACTTCGTCT CGGAAAGCTC ATAGCCTCTA 
AAGGCTTACT CGTCACCTTT GTCACCACAG AGAAGCCATG GGGCAAGAAG 
ATGCGTCAAG CCAACAAGAT TCAAGACGGT GTGCTCAAAC CGGTCGGTCT 
AGGTTTCATC CGGTTTGAGT TCTTCTCTGA CGGCTTCGCC GACGACGATG 
AAAAAAGATT CGACTTCGAT GCCTTCCGAC CACACCTTGA AGCTGTCGGA 
AAACAAGAGA TCAAGAATCT CGTTAAGAGA TATAACAAGG AGCCGGTGAC 
GTGTCTCATA AACAACGCTT TTGTCCCATG GGTATGTGAT GTCGCCGAGG 
AGCTTCACAT CCCTTCGGCT GTTCTATGGG TCCAGTCTTG TGCTTGTCTC 
ACGGCTTATT ACTATTACCA CCACCGGTTA GTTAAGTTCC CGACCAAAAC 
CGAGCCGGAC ATCAGCGTTG AAATCCCTTG CTTGCCATTG TTAAAGCATG 
ACGAGATCCC AAGCTTTCTT CACCCTTCGT CTCCGTATAC AGCTTTTGGA 
GATATCATTT TAGACCAGTT AAAGAGATTC GAAAACCACA AGTCTTTCTA 
TCTTTTCATC GACACTTTTC GCGAACTAGA AAAAGACATC ATGGACCACA 
TGTCACAACT TTGTCCTCAA GCCATCATCA GTCCTGTCGG TCCGCTCTTC 
AAGATGGCTC AAACCTTGAG TTCTGACGTT AAGGGAGATA TATCCGAGCC 
AGCGAGTGAC TGCATGGAAT GGCTTGACTC AAGAGAACCA TCCTCAGTCG 
TTTACATCTC CTTTGGGACT ATAGCCAACT TGAAGCAAGA GCAGATGGAG 
GAGATCGCTC ATGGCGTTTT GAGCTCTGGC TTGTCGGTCT TATGGGTGGT 
TCGGCCTCCC ATGGAAGGGA CATTTGTAGA ACCACATGTT TTGCCTCGAG 
AGCTCGAAGA AAAGGGTAAA ATCGTGGAAT GGTGTCCCCA AGAGAGAGTC 
TTGGCTCATC CTGCGATTGC TTGTTTCTTA AGTCACTGCG GATGGAACTC 
GACAATGGAG GCTTTAACTG CCGGAGTCCC CGTTGTTTGT TTTCCGCAAT 
GGGGAGATCA AGTGACTGAT GCGGTGTACT TGGCTGATGT TTTCAAGACA 
GGAGTGAGAC TAGGCCGCGG AGCCGCTGAG GAGATGATTG TTTCGAGGGA 
GGTTGTAGCA GAGAAGCTGC TTGAGGCCAC AGTTGGGGAA AAGGCGGTGG 
AGCTGAGAGA AAACGCTCGG AGGTGGAAGG CGGAGGCCGA GGCCGCCGTG 
GCGGACGGTG GATCATCTGA TATGAACTTT AAAGAGTTTG TGGACAAGTT 
GGTTACGAAA CATGTGACGA GAGAAGACAA CGGAGAACAC TAGTGATAAT 
GATGTCTCGA AAATATCCGA CTATTTGTTG TACCGCAAAA ACCTTAACCA 
CTACAACCTT TTCTTTTTTC TTGTCAATAA ATCGTATCAA TCTCATTCCA 
AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT4G15490.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 6.3e-25
HMMPanther UDP-GLUCOSYLTRANSFERASE 2.6e-128
HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 2.6e-128
Gene3D no description 5.7e-20
superfamily UDP-Glycosyltransferase/glycogen phosphorylas 2.4e-57
PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
Coil coiled-coil 0

See the detailed result >

AT4G15490.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Curator Summary
Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.
Computational Description
UGT84A3; FUNCTIONS IN: UDP-glycosyltransferase activity, sinapate 1-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT4G15500.1); Has 8054 Blast hits to 7973 proteins in 495 species: Archae - 0; Bacteria - 428; Metazoa - 2313; Fungi - 57; Plants - 5089; Viruses - 102; Other Eukaryotes - 65 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-O17 introduced

  • F07601 - stem::increased thickness / stem::decreased thickness / fruit::decreased length / stem::present in greater numbers in organism
  • F09101 - Specific phenotypes were NOT observed.
  • F12443 - Specific phenotypes were NOT observed.
  • F14147 - seed::increased size / seed::increased length
  • F16442 - Specific phenotypes were NOT observed.
  • F22118 - seed::increased length
  • F28243 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found