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RAFL05-18-P09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87526)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-18-P09 - 5 prime EST
GAAGAAAAGG CAGAGAAGAG AGAGGCTCTG ATAAAAAAAA AAACAAAAAA 
AAATGACAAA GGCTTATTCA ACACGTGTCC TCACGTTTCT GATATTGATC
TCGCTAATGG CGGTGACACT GAACCTTTTT CCCACGGTAG AGGCAAAGAA
GCGGAGTAGA GATGCTCCTA TAGTGAAAGG TCTCTCATGG AACTTTTACC
AGAAAGCATG TCCGAAAGTC GAAAACATCA TCAGAAAAGA GCTCAAGAAA
GTCTTCAAGC GAGATATTGG TTTAGCCGCT GCCATCCTTC GTATACATTT
CCATGATTGC TTCGTTCAGG GATGTGAAGC ATCAGTGCTG CTAGCTGGAT
CAGCCAGTGG ACCAGGAGAA CAATCATCAA TCCCAAATCT GACACTACGA
CAACAAGCCT TTGTCGTCAT TAATAACCTT CGTGCCCTCG TCCAAAAGAA
GTGCGGTCAA GTCGTCTCTT GCTCAGATAT CCTCGCTCTC GCCGCTCGCG
ATTCCGTCGT CCTATCAGGA GGGCCAGACT ATGCTGTCCC ACTTGGCCGA
CGTGACTCTC TAGCGTTCGC GAGCCAGGAA ACGACGTTAA ATAACTTACC
ACCACCGTTC TTCAACGCGA GTCAGCTCAT CGCCGACTTC GCCAACAGAA
ACCTCAACAT CACCGACTTA GTAGC

Gene models with high sequence identity

  1. AT1G71695.1 [+] show detail - Peroxidase superfamily protein
    E-value: 0; Score: 100.00

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-18-P09 - 3 prime EST
AAGATGAAGC GACGTTCTTA TTTATCAGAT AGTTTTACGC ATTCGACAAC 
CCAACCACAA GTGCATGAAC TAAATAAAAA CAGAGTTGAC AAAGGAAAGG
TCGAGATTTA TGGTTATTTA GATCATGGAA ATAGCTTCCT CTATGCCTTC
TTCCAAAACG GACATGAAAC TTTGGGTGTT TCTGGCTGAA CAATTGGAAC
GAATCTCTCC TTGTGTTCCA GTTAAGACAC TCATCTGACC CATCTTGATC
ATCGCCACAG TAAAATAATC AAAAAACAGC TGCTGGTCGA TCGCAAAGCT
TTCCACAATG CCACGTGTCC TCTTATCCAC GAAGAGATCC TGGTCAGAAG
TGAATAGCCC TTGTCGGTTC ATGAGATCAA CGTAGTACTT GTTGTCGAAC
ACGTCAGGAC TCCTTATGTC ATTCACTTGC GTGTTGCTCG AGTTTGCGGT
GGGACAAGTG CGTTTGAGGC TGTTGGCGAA GAACTGGTTC ATGGTTGGGT
CTTGGTTCGG GTAGAGTCGG TCTGTGAAAG ACGGACAATG CGCGATTCCG
ATGGTGTGAC CACCGGAAAG TGCTACTAAG TCGGTGATGT TGAGGTTTCT
GTTGGCGAAG TCGGCGATGA GCTGACTCGC GTTGAAGAAC GGTGGTGGTA
AGTTATTTAA CGTCGTTTCC TGGCTCGCGA ACGCTAGAGA GTCACGTCGG
CC

Gene models with high sequence identity

  1. AT1G71695.1 [+] show detail - Peroxidase superfamily protein
    E-value: 0; Score: 100.00

AT1G71695.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18150.1); Has 4523 Blast hits to 4498 proteins in 279 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 207; Plants - 4264; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-18-P09 introduced

  • F00637 - Specific phenotypes were NOT observed.
  • F08231 - rosette leaf::epinastic / cauline leaf::epinastic / root::present in greater numbers in organism
  • F12822 - Specific phenotypes were NOT observed.
  • F14506 - seed::increased length
  • F17946 - Specific phenotypes were NOT observed.
  • F25904 - seed::increased size
  • F26627 - Specific phenotypes were NOT observed.
  • F27521 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

18 mutant lines found