1. Home
  2. Full-length cDNAs
  3. RAFL05-19-C11

RAFL05-19-C11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02776)

full reading [+] show sequence

Nucleotide sequence: RAFL05-19-C11 - full reading 
TTACACGTCT ATCTTTCTTT CCTTTGTATA CCAAAAAATA TAAAATAAAA 
AACACTATGG CGGAAAACTA CGACCGTGCC AGTGAGTTAA AAGCATTCGA 
CGAGATGAAG ATTGGCGTGA AAGGACTCGT CGACGCCGGA GTCACAAAAG 
TCCCGCGCAT TTTCCATAAC CCGCATGTTA ACGTAGCAAA CCCTAAGCCT 
ACATCGACGG TGGTGATGAT TCCAACAATC GATCTAGGTG GCGTGTTCGA 
ATCCACGGTC GTGCGAGAGA GTGTAGTTGC GAAGGTTAAA GACGCAATGG 
AGAAGTTTGG ATTTTTCCAG GCGATTAACC ATGGGGTTCC ACTTGATGTG 
ATGGAGAAGA TGATAAATGG TATTCGTCGG TTTCACGACC AAGATCCAGA 
AGTGAGGAAA ATGTTCTATA CCCGAGACAA AACCAAAAAG CTTAAATATC 
ACTCTAATGC TGATCTCTAT GAGTCTCCTG CTGCGAGTTG GAGAGATACC 
TTAAGTTGTG TCATGGCTCC TGATGTTCCA AAAGCACAGG ACTTACCTGA 
GGTTTGTGGG GAGATCATGT TGGAGTACTC AAAGGAAGTG ATGAAGTTAG 
CGGAGTTAAT GTTTGAAATT TTATCAGAAG CTTTAGGGTT GAGTCCTAAC 
CACCTCAAAG AAATGGATTG CGCAAAAGGT TTATGGATGC TCTGTCATTG 
TTTTCCACCC TGTCCTGAGC CAAACCGAAC ATTCGGCGGC GCTCAGCACA 
CAGACAGATC TTTCCTTACT ATTCTTCTTA ACGACAACAA TGGAGGACTT 
CAAGTTCTCT ACGATGGATA CTGGATCGAT GTTCCTCCTA ATCCCGAAGC 
ACTTATCTTT AACGTAGGAG ATTTCCTCCA GCTTATCTCG AATGACAAGT 
TTGTAAGCAT GGAGCATAGA ATTTTGGCAA ATGGAGGTGA AGAGCCGCGC 
ATTTCGGTCG CTTGTTTCTT TGTGCATACT TTTACTTCAC CAAGTTCGAG 
AGTATATGGA CCCATTAAAG AGCTTCTGTC TGAGCTAAAC CCTCCAAAAT 
ACAGAGACAC CACCTCGGAA TCCTCCAATC ACTATGTGGC TAGAAAACCT 
AATGGGAATT CTTCGTTGGA CCATTTAAGG ATCTGAAACT TGAACCTATA 
TCTCAGAGGT TTTCTTGAGT TTCCAATAAA ATTTGGTGCA CGCTGTGACG 
TACCATGTTC AAGACCTTGA ACGTATCATT CAATAATTCT TCCGTTGTGA 
GTTTCGGCTG CATGTTTGAC CCAAACCAGA GAGAGTATGG ATCAATCAAG 
GAGAGTGAAC CTAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT2G25450.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
HMMPanther 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 8.1e-174
HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 8.1e-174
Gene3D no description 2.6e-85
superfamily Clavaminate synthase-like 2.9e-82
HMMPfam Oxoglutarate/iron-dependent oxygenase 1.7e-20

See the detailed result >

AT2G25450.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator Summary
encodes a protein whose sequence is similar to ACC oxidase
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G30830.1); Has 7865 Blast hits to 7837 proteins in 966 species: Archae - 0; Bacteria - 1060; Metazoa - 82; Fungi - 676; Plants - 4824; Viruses - 0; Other Eukaryotes - 1223 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-19-C11 introduced

  • F02444 - Specific phenotypes were NOT observed.
  • F04232 - Specific phenotypes were NOT observed.
  • F04646 - Specific phenotypes were NOT observed.
  • F06001 - Specific phenotypes were NOT observed.
  • F08849 - Specific phenotypes were NOT observed.
  • F16405 - Specific phenotypes were NOT observed.
  • F18612 - Specific phenotypes were NOT observed.
  • F19929 - Specific phenotypes were NOT observed.
  • F23426 - Specific phenotypes were NOT observed.
  • F25108 - Specific phenotypes were NOT observed.
  • F26632 - Specific phenotypes were NOT observed.
  • F30124 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

15 mutant lines found