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RAFL05-19-C14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07428)

full reading [+] show sequence

Nucleotide sequence: RAFL05-19-C14 - full reading 
GCTTTAACGA CAGTCGCCGA GTGAGAGATA TAGAGAGAGA AAGATGCCGG 
TGCACGATGA GCAAGAGCAT GAGGTGTACG GTGGAGAGAT CCCAGAAGAG 
GAAGAAGGTG AGATGGATAC GGAAGAGTAC GAAGAACACG GCGGAGAAGA 
AGGTGCCGCC GCCGGAGATG AGGAGCTTGA ACCTGGCTCT AGCTCTAGGG 
ACTTGGAGGA TATGAAGAAA CGAATTAAGG AGATTGAGGA AGAAGCTGGA 
GCTTTGCGTG AAATGCAAGC CAAGGCTGAG AAAGATATGG GTGCTAGTCA 
AGACCCTTCA GGTGGTGTTA GTGCGGCTGA GAAGGAAGAA GTGGATTCGC 
GTTCAATATA TGTTGGCAAT GTGGACTATG CATGTACTCC AGAGGAAGTC 
CAGCAGCATT TTCAATCATG TGGGACAGTG AATAGGGTTA CAATTCTGAC 
AGATAAGTTT GGTCAACCTA AAGGTTTTGC GTATGTCGAA TTTGTGGAAG 
TAGAAGCTGT TCAGAATTCG CTTATTTTGA ACGAGTCAGA ACTACATGGT 
CGTCAGATAA AGGTATCTGC AAAGAGGACT AATGTACCTG GAATGAGGCA 
ATTTCGAGGA AGAGGGCGTC CCTTTAGACC GATGAGGGGA TTCATGCCAG 
GAGTTCCATT TTATCCTCCA TATGCTTATG GGAGAGTTCC CAGGTTCAGA 
CGGCCTATGC GCTACAGACC GTACTGATTA GGCAAATTGG TGTTAAAAAA 
GTAGCAGCTG CTTCTCCGTT TTCGGGAAAG CTTATCATCA TCAACACGGT 
TCATCGGACG CTGCAGTTGT TTCGATTAAC AGAGATGAGT TGAAGAATTG 
TATGGCAGAA GAGAGAGGGG AATTATATTC TAGATTTTCT GTACAATATT 
TGATGACAAG TGCAACATTT TGAGGAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT5G51120.1 [+] show detail - polyadenylate-binding protein 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther POLY-A BINDING PROTEIN 2 1.2e-28
superfamily RNA-binding domain, RBD 3.8e-24
ProfileScan RNA recognition motif, RNP-1 16.602
Coil coiled-coil 0
HMMSmart RNA recognition motif, RNP-1 7.9e-21
Gene3D Nucleotide-binding, alpha-beta plait 2.2e-21
HMMPfam RNA recognition motif, RNP-1 1.5e-16

See the detailed result >

AT5G51120.1

Model type
Protein coding
Short Description
polyadenylate-binding protein 1
Curator Summary
Encodes a homolog of the protein PABN1, a polyadenylation factor subunit.
Computational Description
polyadenylate-binding protein 1 (PABN1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-19-C14 introduced

  • F10342 - Specific phenotypes were NOT observed.
  • F18819 - seed::increased size / seed::increased length
  • F23045 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found