1. Home
  2. Full-length cDNAs
  3. RAFL05-19-F14

RAFL05-19-F14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07433)

full reading [+] show sequence

Nucleotide sequence: RAFL05-19-F14 - full reading 
AAGGGGAAAG AAATGAGCGC GACGCAGACG CAGACGCATG GACCGCACTC 
GCTGGCCTTC AGGGTGATGC GACTCTGCAA ACCGTCTTTC CACGTCGATC 
CTCCCCTCCG CATTGACCCT TTCGATCTTC TCGCCGGCGA GGATTTCTCC 
GACGATCCCT CTTCCGCCTC CTTGTTCCGC CGCCACGTAT CTTCTGCCGA 
CGCTGTCGAC TCCGATCTCA GCTACCGAAA TAGATTCCTC CTCAACCATC 
CTACCGATCC AATCGGTCTC TCTGGTCTTC TGCTTCTTCC TCAGTCCTTC 
GGAGCGATCT ATCTCGGAGA AACATTCTGT AGCTATATCA GCGTCAACAA 
TAGTTCCACT TCAGAAGTTC GGGATGTTAC CATTAAGGCA GAAATTCAGA 
CAGAGAGGCA GAGGATTCTA CTTCTGGATA CATCCAAGTC ACCTGTTGAA 
TCGATACGGA CAGGTGGACG CTATGATTTC ATAGTTGAAC ACGATGTGAA 
AGAGCTTGGA GCTCACACGT TGGTTTGCTC TGCATTGTAC AATGACGCTG 
ATGGTGAGCG TAAATATCTT CCCCAGTTTT TCAAGTTTGT CGTTGCAAAC 
CCACTCTCAG TGAGGACCAA GGTTCGAGTT GTAAAGGAGA CGACATTTTT 
AGAGGCTTGC ATTGAGAACC ATACAAAAGC AAACCTCTTT ATGGACCAAG 
TTGATTTTGA ACCTGCTAAG CAATGGAGTG CTGTAAGATT ACAGAATGAA 
GACTCAACAG AAGATCCTCC AACCAGTGGT CTTAGTGGAC TGATACCTAA 
ACCGCCAGTT ATAATCCGAT CTGGCGGGGG TATCCACAAC TATCTCTACA 
AGTTAAACCC ATCTGCAGAT GTTTCCGGGC AAACAAAATT CCAGGGAAGT 
AATATCCTGG GTAAATTTCA AATAACATGG CGCACAAATT TGGGTGAACC 
TGGTCGCTTA CAAACACAAC AAATTCTCGG CGCTCCAGTA AGCCGTAAAG 
AGATTAATAT GCGAGTTGTA GAGGTTCCAG CTGTTATACA CTTAAATAGA 
CCCTTTCGGG CATACTTGAA TCTCACAAAC CAAACTGATA GGCAACTGGG 
ACCCTTCGAG GTCTCACTGT CACAAGATGA AACACAATTG GAGAAGCCGG 
TTGGTATTAA TGGTCTCCAG ACTCTGATGT TACCCAGGAT TGAAGCATTT 
GGCTCCAATG ATTTCCAATT GAATCTTATT GCCTCCAAGC TGGGAGTCCA 
GAAAATCGCT GGGATCACGG CCTTGGACAC AAGAGAGAAA AAAACCTACG 
AACTTGTTCC AGATATGGAG ATATTTGTAG AGACAGACTA AGTTATAAGA 
CAGCCTCCCC GAGTGGTGTT CTTCCTCGAC AGGTTTTGTT ATTGCACCTC 
CTCTGTGTTG TTAATTGTTT TTGTTTCTTA GTAGAAAATA ATTTGGCTCC 
TTTGTAGAAG AAGAAAAAAA CTAAACGGCT TTAACATATG GACTACGCCG 
TTTGTATCTT GTTGTTACAA ACCATTAAAC GTTACTGTTT GATCAATATG 
TTAATTCAGA ACTGTTTGGT TTAAAGCGAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT2G47960.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF974 (InterPro:IPR0103...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF974 5.1e-81
HMMPanther gb def: Expressed protein (Hypothetical prote 0
HMMPanther Protein of unknown function DUF974 0

See the detailed result >

AT2G47960.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF974 (InterPro:IPR010378); Has 285 Blast hits to 284 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 68; Plants - 32; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-19-F14 introduced

  • F18815 - seed::increased size / seed::increased length
  • F26337 - Specific phenotypes were NOT observed.
  • F28735 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found