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  3. RAFL05-19-G13

RAFL05-19-G13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07435)

full reading [+] show sequence

Nucleotide sequence: RAFL05-19-G13 - full reading 
CTGGCTGCAA AAATATCATC AATAGCGAAA AGTCGCTTCT TTTTTCTTCT 
TCCAAAATCT TTAATTTTGT GAAACCGAAG AGATAAGACG TGGAGAAAAG 
CAGACGTCTC TGTTGTTTGT TTTTGATTCA TCGGGTTCTA AGGATTTGTC 
TGTTTCCAAG ACACAAACTT TGGATTCTCT TCTCTTCCTG TTCGTCTTCT 
CTTGTCTTGA TCCTTTTGTT ATCATCATCA TCTCTTCATC GAGAGAAGAG 
AGACGAGATT AGGGATTTAA GTTAAGGAGG ATGTATTATC AGTTGACCAA 
GTCTTCTTAC AGAGACTCTT TGAAGATTCT GGAGGCTGAT ATTGAGCACG 
CCAATGGACT GTGAGTCATC CTCTGATTCT TTCTGGGTTC TTTGATTTTT 
ACTGGGTTTA GGGTCTTTAG TATCGATTGT TATAGTTGGC TTCGATGATT 
TAGGGTTTAG GGCCCCACAA TTTTACATTT TCGGTCGTTA TCACGAACTT 
AGATTATTAA AAATCGAAAC TTTGCAGAAA TGGTCAAAAA ATTGCTAAAT 
TTTGTGGCAT GCGTGGTGTG GTCTTGATGC ATATGTTGTC TGAAGAAATG 
GGTTAAATGT GATTAGAAGG ATGGTAACTG AATAGTCTCA CAATTTGTAT 
ATCTGTGGTG TGGTATTGAT GCATATGTTG TCTGTGGAAA TGGTTTATGT 
GATTCGAAGG ATATAGTAAC TGCTTAGTCT CAGAATTGGT ATCTGTGTGG 
TTTGTTCTTC AGGCATATGT TGTCTGAAGG GATGGGTTAT GTTAGAAGGA 
TTAGTGTAAT GACTGATTAC TCTCAAATTT GATTCAGGGC TGCTGAGATT 
CCAATGGGAA AGAGCGGTGT GCGACTTCAG ATGAAATTGG TGTGCAGCAA 
TTTGGCTCCA TTCTTCATAT TCCTGCTACA ATGGATGGAT TTCTCATGTC 
TGCTTCCAAG ATATTTTGAT TTCTTCCACA TACTCATATA CAAGGTTGTT 
ACCGCATACA TAGATATCGA GTTGTGTGTG TGTGTGTGTG AAATGGTAGA 
TTCCCTGATA GTTTCTCTCC TTTCCTCTTG GCTTGTTTGT TTTATAGGTG 
TCTTCTTTGT CTTGTACAGG TACGTGCTGA TGGGCGGTGG AATCGATCTA 
GGTACGGAAG GAAAGCTACG ATTAGGGAGT TTTACGGTGT TATATTACCA 
TCACTTGAGC GACTTCATAT CAACTTTGCT GACTTACCGG ACGAAAGCTT 
GTGGTATCCG AATCCAAAAG CCATCACCAA GAAGCAGTAT GACATTGAAG 
GTAGCAGATA CATGAATAGC ATTGACTTGG AAAGAGAAGA CGAATGCGGG 
ATTTGCTTAG AGCCTTGCAC CAAAATGGTG TTGCCAAACT GTTGTCATGC 
CATGTGCATC AAATGTTACC GTAACTGGAA CACAAAGTCG GAGTCATGCC 
CGTTTTGTCG TGGCAGCATC AAGAGAGTGA ACTCAGAGGA TCTGTGGGTG 
CTAACTTGCG ATGAAGATGT GGTGGATCCA GAGACGGTCA CCAAAGAGGA 
TCTTCTTCGG TTCTACCTCC ACATCAATAG CCTTCCTAAG GATTATCCAG 
AAGCGGCCTT CTTAGTCTAC AACGAGTACT TGATATGATT TTATCCCGAA 
ACATAAATAC GGGTGTACAG AGGGAGAGAG TGATCCCAGA CCTTTGATTA 
AGTGTACATA AGAATCTGGT GATCCATTAA TGTTCCTTCG TTTTAGATTA 
TGATTTATGA AGATTGTCAT AATCTTAATG TGTACCCCTT TTATTATCAA 
AGATCAAATG AGAAAGATGA TCTTCGAAAA AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT1G24440.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Zinc finger, RING-type 11.722
superfamily RING/U-box 0.0000000000018
HMMSmart Zinc finger, RING-type 0.00084
PatternScan Zinc finger, RING-type, conserved site 0
Gene3D no description 0.0000082

See the detailed result >

AT1G24440.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G13195.1); Has 869 Blast hits to 869 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 288; Fungi - 71; Plants - 339; Viruses - 31; Other Eukaryotes - 140 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-19-G13 introduced

  • F13247 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found