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  3. RAFL05-19-K20

RAFL05-19-K20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01329)

full reading [+] show sequence

Nucleotide sequence: RAFL05-19-K20 - full reading 
GTCCTGAGGT GTCAAAAACT AAAGCAAAGC CTCTCAGCAC GGTGAGAGAT 
TCCGGTGATA ACGTCCTCCG ATGGCGACAA CTCAACCATG TCTTATCGGC 
CAAATAATCG CTGTTCCTCA ATTTCACATC CTCTTCAGCC CCAGAAATTC 
TCTAAAGCCG GAGCTCTCGA CCAACAAACG CACAAATTTC TCCGTATCTA 
TCGGTCTACG ACATTCCTTC GCTTCTTCTA TATCAACCTG TAACCCTAAA 
GCCCCATCTT TAAGCTGTCT GCGAAATTGC GCCGCTGTTG ATGGAGCTGA 
TACTAGTTCG AGTGAGGATA AGTGGGATTG GGATTGGGAT CGTTGGAACC 
GTCACTTCTC CGAGATTGAA GAAGTCGAGA GCGTTGTTTC TCTTCTCAAG 
TCTCAACTTG AGGATGCTGT TGAAAAAGAA GACTTTGAAG AAGCAGTCAA 
GTTGAAACAA GCTATTTCAG AAGCTACTGT TGATGATGCT GTCGCTGAGA 
TCATGCGCCA GTTACAGACT GCAGTAAACG AAGAGCGTTA CCATGATGCT 
TCCAGGTTAT GTAACGAGAC AGGAAGTGGA CTGGTGGGTT GGTGGGTTGG 
TTTACCTCGA GATTCTGAGG AACCATTTGG CAGAATTGTA CACATAACTC 
CAGGTGTTGG TAGGTTTATT GGCAAGAGTT ACAGTCCAAG ACAGCTGGTG 
GCTGAAGCAG CTGGAACACC CCTGTTTGAG ATTTTCGTTA TTAAAGACAC 
TGACGGAGGA TATGTTATGC AGGTGGTGTA TGTGCAACAC GTGAAGCAAA 
ACCTAACCAT TTCCGAGAAT TCCTTTTCAA AAGTACAGCA ATCCTCGAAA 
TCCTCGATCA ATGACCCATC CATTTTAGAT GTACGAGGAA GTGAACTGAA 
GGTGGATAAA AAAGAAGATA CACAACTAAA TGCTGGGGAA CCAACTGAAG 
AAGGAATTAA AAATGTGATA AAATTTCTAA AAGATAAAAT CCCAGGGCTA 
AAACTGAAAG TAATGGATGT TATTAAAATC CCTGAGGAAG AGATTGTTGG 
CAGTGATGAC GCTACTGAAG AGCTGGTTGG AGAAGGCACT GAGGAAACAA 
ATTCTTCTGA TGATGAAGAA GAAGTAGAAG AAGAAGAAAA TGACAGTATT 
GAAGCAATCT CATCTATGGA TAGTGCAGAT TATGGAAAGC ATTCAAACAC 
TAAGCTTGTC ATCGGAGGGG TTCTACATAA CATAGAGGAT TCCTCTATAG 
ATGATGAGAT TGTCCGTGTG TCGGCAAATA TAATGGATAC TGAAAGAGAT 
TCCTTTATAT TGCATGTTCC TGGGAGAAGT AAGAGGGATA TCGATACAAG 
GAAAAATAGA GTGTCCAAAG AACAAGTAAC AGCTCTTGCA GCTCAAGGAC 
TTTCAGATCT GTTGCCACCA GAGGTTGCCG AGGCGTTCTG GGGAGAGAAA 
GCTTCTTTGA AGGTATCGAA ACATGTGCAT GAGATTGTCA AGCTTGCTAT 
AAACCAGGCA CAAAAAGGAA ACCATCTCTC CGAGTATACA GCATTTAATA 
GAATCATAAC TCCTGAAAGC AACTTAGACC CTTTTGATGG TCTATATGTG 
GGTGCATTCG GGCCTTATGG CACCGAGATA GTGCAACTTA AGCGTAAGTA 
TGGTCGGTGG GATGATGCAG AAGGAAGTAA CTCCTCAGAT ATAGAGTTCT 
TTGAATATGT TGAGGCTGTA AAGTTGACAG GGGATCCAAA TGTGCCGGCT 
GGCCAGGTGA CATTCCGTGC AAGGATTGGG AATGGGAGTC GCATGACGAA 
TCATGGATTG TTTCCAGAGG AATTGGGAGT GCTTGCGAGT TACAGAGGGC 
AAGGAAAAAT CGCTGACTTT GGGTTTAAAA AGCCAAGATG GGTCGAGGGC 
AAGCTCTTAA AACTCAATGG AAAGGGAATG GGACCATATG TGAAGGGCGC 
AGATCTTGGA TTTCTATATA TTGGCCCTGA GCAGAGTTTC TTGGTCCTTT 
TCAACCGTCT GAGACTGCCT GAGTGACCAA TACACCGTCG TTTTGTTGTA 
ACTATATACT ACTCCTTGGC TTTGTTCCTT ACACTCTAAC AATTATAAAG 
CAAAATCACC TTGAGAGTGT TTAGAATATA AGAACTTTTG AAAAAAAAAA 
AAAAAA

Gene models with high sequence identity

  1. AT1G27510.1 [+] show detail - Protein of unknown function (DUF3506)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF3506 1.4e-41
HMMPfam UvrB/UvrC protein 0.00011
Coil coiled-coil 0

See the detailed result >

AT1G27510.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3506)
Computational Description
FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3506 (InterPro:IPR021894), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3506) (TAIR:AT4G33630.2); Has 287 Blast hits to 280 proteins in 95 species: Archae - 0; Bacteria - 15; Metazoa - 66; Fungi - 43; Plants - 121; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-19-K20 introduced

  • F09645 - seed::increased size / seed::increased length
  • F10741 - Specific phenotypes were NOT observed.
  • F20131 - Specific phenotypes were NOT observed.
  • F30034 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found