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RAFL05-19-L04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02787)

full reading [+] show sequence

Nucleotide sequence: RAFL05-19-L04 - full reading 
AGAGAAGAGA GCTGTGTTGG TTTTTGAGGT AAAAGAAGAG ACCCAATTTC 
GATTTGGAGG ATAGAGACGA AGAAGAAGAC AGCTCCGATG GCTGATCCTG 
AACTAGAAGC TATTAGACAG AGGAGAATGC AAGAGCTCAT GGCTCGACAA 
GGCATGGGTA AGCAGGGCAA TCAGCAGAAT CCAGAGCAAG AGAAACAGCA 
GGAAGATGCT AAAAGGGAAG CTGATGAACG TAGGCAAATG ATGCTTAGTC 
AAGTATTGTC TTCTCAAGCC CGAGAGAGAA TTGCTCGAAT TGCTCTGGTG 
AAACCTGAGA AAGCTAGAGG TGTGGAGGAT GTTATTTTGA GGGCTGCTCA 
GATGGGACAG ATAGTTGAGA AGGTTTCTGA GGAACGGCTT ATAACACTGT 
TGGAACAAAT AAACAGCCAA ACTACCAAGC AAACGAAAGT CACGTACCAA 
CGGCGCCGTG GGGTGGACGA CGATTAGGAA GGAAGAAGAA TATTATGATG 
TGCTTTGTAT ATCTATGGAG ATCTCACTGT TATGTTAGTG AGTTCACTTA 
AGATCTACTT AAATGTTTCT GTTCAATATG TTTATTGTGA GTGAATCTTG 
ATTATCTTCC AAGCACTTGG GATGAGATTA AAGCAATCTG AAACTGAAGC 
TCTACATTTT TACTAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT1G29850.1 [+] show detail - double-stranded DNA-binding family protein
    E-value: 0; Score: 99.85

 

InterPro Scan Digest

Program Description E-value
HMMPfam DNA-binding TFAR19-related protein 4.3e-30
HMMPIR DNA-binding TFAR19-related protein 2.1e-58
Gene3D DNA-binding TFAR19-related protein 5.5e-20
HMMPanther DNA-binding TFAR19-related protein 6.4e-49
superfamily DNA-binding TFAR19-related protein 1.1e-21

See the detailed result >

AT1G29850.1

Model type
Protein coding
Short Description
double-stranded DNA-binding family protein
Computational Description
double-stranded DNA-binding family protein; FUNCTIONS IN: double-stranded DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding TFAR19-related protein (InterPro:IPR002836); Has 689 Blast hits to 689 proteins in 324 species: Archae - 253; Bacteria - 2; Metazoa - 140; Fungi - 128; Plants - 54; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-19-L04 introduced

  • F01001 - Specific phenotypes were NOT observed.
  • F04340 - Specific phenotypes were NOT observed.
  • F04849 - Specific phenotypes were NOT observed.
  • F07008 - Specific phenotypes were NOT observed.
  • F08902 - Specific phenotypes were NOT observed.
  • F18418 - seed::increased size
  • F20814 - Specific phenotypes were NOT observed.
  • F21605 - Specific phenotypes were NOT observed.
  • F25603 - rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / sporophyte vegetative stage::decreased speed
  • F26707 - Specific phenotypes were NOT observed.
  • F26803 - Specific phenotypes were NOT observed.
  • F28501 - Specific phenotypes were NOT observed.
  • F28550 - fruit::decreased length / stem::abnormal
  • F29135 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

14 mutant lines found