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RAFL05-19-L05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87531)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-19-L05 - 5 prime EST 
GATCACTTTC TCTTGATCAC TCACTGCATC AACAATGGCC AGAGAGAAGA 
TTGTGGTGGC CTGGTGGTAC CACAAAGAGC TGGAAACTAC TCTTGGGGCT 
GAGAATATTT GCATTCATGG CTACTTTAGC TGCAGCCATT GTAATGTCAC 
TAAACAAAGA GACAAAGACC TTGGTTGTGG CCACCATTGG TACTGTTCCT 
ATTAAAGCCA CTTTAACCGC TAAGTTTCAG CACACACCGG CTTTTGTGTT 
CTTTGTTATA GCTAATGTAA TGGTGAGCTT CCACAACTTG TTGATGATTG 
NGGTTCANAT TTTCAGCCGG AAACTGGAGT ACAAAGGTCT TCGTCTCCTC 
TCTATCGCCA TTCTTGACAT GCTAAACGCA ACACTAGTAT CTGCGGCTGC 
AAACGCGGCG GTGTTCGTGG CAGAGCTAGG GAAGAACGGA AACAAGCACG 
CCAAGTGGAA CAAAGTCTGC GACAGGTTCA CCACTTACTG TGATCACGGC 
GCANGAGCAA TCATCGCAGC ATTCGCCGGA GTCATTCTAA TGCTCCTCGT 
GTCCGCCGTC TCTATTT

Gene models with high sequence identity

  1. AT4G20390.1 [+] show detail - Uncharacterised protein family (UPF0497)
    E-value: 0; Score: 99.29

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-19-L05 - 3 prime EST 
GAATTTTTTT TTGTCATTTT AGAATTATAT AAAAAGATAA GAGAGAAATG 
AAAACTTGAA TACAAATGTG AAAGTGATAG AACAAAGGAG TGCATTACAC 
AATTTGCTAG TGACTTGAGA GACAAACACA CAAAGTAAGC CACAACATCT 
ATAAAATGGT CACACACATG TTGCTGAATT TTTGGCCACG ATGTTTTAGA 
CGACGGAGGT TGTGGTGGCG GTGGTGGGAG AAGTTTTTAG AATTGATTAA 
GAGGCGGGAA ATAGAGACGG CGGACACGAG GAGCATTAGA ATGACTCCGG 
CGAATGCTGC GATGATTGCT CCTGCGCCGT GATCACAGTA AGTGGTGAAC 
CTGTCGCAGA CTTTGTTCCA CTTGGCGTGC TTGTTTCCGT TCTTCCCTAG 
CTCTGCCACG AACACCGCCG CGTTTGCAGC CGCAGATACT AGTGTTGCGT 
TTAGCATGTC AAGAATGGCG ATAGAGAGGA GACGAAGACC TTTGTACTCC 
AGTTTCCGGC TGAAAATCTG AACCACAATC ATCAACAAGT TGTGGAAGCT 
CACCATTACA TTAGCTATAA CAAAGAACAC AAAAGCCGGT GTGTGCTGAA 
ACTTAGCGG

Gene models with high sequence identity

  1. AT4G20390.1 [+] show detail - Uncharacterised protein family (UPF0497)
    E-value: 0; Score: 99.84

AT4G20390.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0497)
Computational Description
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT5G44550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-19-L05 introduced

  • F09447 - rosette leaf::epinastic / rosette leaf::decreased width / stem::increased thickness
  • F24046 - cauline leaf::abnormal / fruit::abnormal / fruit::decreased length / fruit::decreased thickness / stem internode::decreased length / rosette leaf::epinastic / cauline leaf::desaturated green / cauline leaf::abnormal / fruit::decreased length / stem::abnormal / fruit::abnormal

Mutant lines with disrupted or induced

2 mutant lines found