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  3. RAFL05-19-M21

RAFL05-19-M21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01333)

full reading [+] show sequence

Nucleotide sequence: RAFL05-19-M21 - full reading 
GAGGAGCGGT TGAGTTGAAA TTTGCTGGCG CGTACTCGTC AACGTAACGC 
GCGTGGAGTG TTTTCGTGTC CCTCCTCCTC CTCCTCCTCC TCACTAAGAC 
AAATATTTTG AGGTTCTCTT TCTCGTTTGT GTGATCTGTC TGACAAGCTA 
GAAGAATCGT AGATCGTGAT CGGATTGATT TGATAATTAT GGTGAAGGAG 
ACGGAGTTTT ACGATGTCCT CGGCGTTAGC CCCACCGCTA CGGAGGCTGA 
GATTAAGAAA GCTTATTACA TCAAGGCACG CCAAGTGCAT CCAGATAAAA 
ACCCTAATGA TCCTCAGGCT GCTCATAATT TCCAGGTATT GGGAGAGGCC 
TACCAAGTGC TAAGTGATCC AGGGCAACGT CAGGCCTATG ACACATCTGG 
GAAGTCAGGG ATTTCAACTG AGATCATTGA TCCTGCGGCT ATATTTGCTA 
TGCTTTTTGG GAGTGAACTC TTTGAAGAAT ACATAGGGCA GCTTGCTATG 
GCATCAATGG CTTCACTTGA TATCTTCACT GAAGGGGATC AGATTGATAC 
TAAAAAGATT ATAGAAAAAA TGAGGGCTGT TCAGAAAGAA AGAGAAGACA 
AACTTGCTCA GATTCTTAAG GACCGCCTCA ACCTATATAT GACGAACAAA 
GATGAATTTA CTAGCAATGC TGAAGCTGAA GTAACAAGAC TCTCAAATGC 
AGCATACGGG GTGGAAATGT TGAACACAAT CGGATATATA TATGTCAGAC 
AAGCGGCAAA AGAGCTTGGG AAGAAAGCTA TTTATCTCGG TGTGCCATTC 
GTAGCTGAAT GGTTTAGGAC GAAAGGTCAC TTCATCAAAT CCCAAGTAAC 
AGCTGCAACA GGTGCATACG CTTTATTCCA GCTGCAAGAG GAAATGAAAA 
GGCAACTAAG TGCTGAAGGC AATTATACCG AGAAGGAACT TGAAGAGTAC 
ATGAAGACCC ATAAGAAAGT AATGATTGAT TCTCTGTGGA AGCTCAATGT 
TGCTGATATC GAAAGCACTA TCTCCCGTGT TTGTGAGCAG GTACTTCAAG 
ATCCCACTGC CAAGAGAGAG GAGCTTCGTG CAAGGGCCAA GGGGTTAAAA 
ACTCTGGGAA AGATCTTCCA GAAGAACAAG ATAGCCAGTG AGAGTGATCC 
TTTAGTAAGA GCCGAACTTC ACAAACTAAA CGGAAATGGT CAAGAACATG 
ATCATTCATC CACATCACCA AAATCTGATG AAGCATCTCG CTCTACCGTT 
GGACCTCAGG AACCGCAAAG CCCTTATGTG GAAGCACCGA AACTTGGAGA 
AGAGCAAATC AACTATTACT TCCCAAGGCC TGCGCCGCCT CCAGGAGCAC 
AGAGACACTC TTAAACTGGC AATGGATTGA TTCACAGATG AACGAAAAGG 
TTATTTTTTC CTTTTTTTGC TATATAATAT AAGTCTTTAT GCATATTTGA 
TATATTTGCA GGCGTTGGTA TTACCATTAT GTAATTTTTA TTATTGTTAG 
AAGAAGAAAT TATTGGATCT TTGAAAAAAG CACATGTTAT CTCATCTTAG 
ACAATGTATA ATGTTTTTAT TCTATTTATA TATTTGATGT TTGAAAAAAA 
AAAAAAAAA

Gene models with high sequence identity

  1. AT1G21080.1 [+] show detail - DNAJ heat shock N-terminal domain-containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Heat shock protein DnaJ, N-terminal 3e-25
PatternScan Heat shock protein DnaJ, conserved site 0
FPrintScan Heat shock protein DnaJ 9.4e-10
FPrintScan Heat shock protein DnaJ 9.4e-10
HMMSmart Heat shock protein DnaJ, N-terminal 2.4e-27
Gene3D Heat shock protein DnaJ, N-terminal 1.3e-22
HMMPanther DNAJ-RELATED 3e-252
HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 3e-252
ProfileScan Heat shock protein DnaJ, N-terminal 20.312
superfamily Heat shock protein DnaJ, N-terminal 1.4e-27

See the detailed result >

AT1G21080.1

Model type
Protein coding
Short Description
DNAJ heat shock N-terminal domain-containing protein
Computational Description
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1); Has 22938 Blast hits to 22804 proteins in 3197 species: Archae - 169; Bacteria - 9211; Metazoa - 3964; Fungi - 2251; Plants - 2330; Viruses - 17; Other Eukaryotes - 4996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-19-M21 introduced

  • F15622 - Specific phenotypes were NOT observed.
  • F16647 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found