1. Home
  2. Full-length cDNAs
  3. RAFL05-19-N12

RAFL05-19-N12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda13449)

full reading [+] show sequence

Nucleotide sequence: RAFL05-19-N12 - full reading 
ACCACATTAA TTTAAAACAA AGAAAACATC AAAATGGCTG AAAAAGTAAA 
GTCTGGTCAA GTTTTTAACC TATTATGCAT ATTCTCGATC TTTTTCTTCC 
TCTTTGTGTT ATCAGTGAAT GTTTCGGCTG ATGTCGATTC TGAGAGAGCG 
GTGCCATCTG AAGATAAAAC GACGACTGTT TGGCTAACTA AAATCAAACG 
GTCCGGTAAA AATTATTGGG CTAAAGTTAG AGAGACTTTG GATCGTGGAC 
AGTCCCACTT CTTTCCTCCG AACACATATT TTACCGGAAA GAATGATGCG 
CCGATGGGAG CCGGTGAAAA TATGAAAGAG GCGGCGACGA GGAGCTTTGA 
GCATAGCAAA GCGACGGTGG AGGAAGCTGC TAGATCAGCG GCAGAAGTGG 
TGAGTGATAC GGCGGAAGCT GTGAAAGAAA AGGTGAAGAG GAGCGTTTCC 
GGTGGAGTGA CGCAGCCGTC GGAGGGATCT GAGGAGCTAT AAATACGCAG 
TTGTTCTAAG CTTATGGGTT TTAATTATTT AAATAATTAG TGTGTGTTTG 
AGATCAAAAT GACACAGTTT TGGGGGAGTA TATCTCCACA TCATATGTTG 
TTTGCATCAC ATGGTTTCTC TGTATACAAC GACCAGATCC ACATCACTCA 
TTCTCGTCCT TCTTTTTGTC ATGAATACAG AATAATATTT TAGATTCTAA 
AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT1G16850.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; ...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G16850.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-19-N12 introduced

  • F00335 - seed::decreased length
  • F13039 - Specific phenotypes were NOT observed.
  • F13506 - Specific phenotypes were NOT observed.
  • F17931 - Specific phenotypes were NOT observed.
  • F24205 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found