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  3. RAFL05-19-N16

RAFL05-19-N16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07450)

full reading [+] show sequence

Nucleotide sequence: RAFL05-19-N16 - full reading 
ATAATTCGAG CTCTCTTGAA GCAAAAAGCT ATCCGCCGTC GACTCGAGCT 
TCGTTCGTCT CTCTGCAAAT ATGGCGACAG CGTATCAACC AATGAAACCA 
GGAAAGGCTG GTTTGGAAGA GCCACTCGAG CAGATTCACA AGATCAGGAT 
TACTCTCTCC TCCAAGAATG TCAAGAACCT TGAGAAAGTG TGCACTGATT 
TGGTTCGTGG AGCTAAGGAC AAGAGACTTA GAGTCAAGGG ACCAGTGAGA 
ATGCCCACTA AGGTTCTCAA GATCACTACC CGAAAAGCTC CCTGTGGTGA 
AGGAACCAAT ACATGGGACA GATTTGAACT TAGGGTGCAC AAGCGAGTGA 
TTGATCTCTT CAGCTCTCCT GATGTGGTCA AGCAAATCAC ATCCATCACC 
ATTGAACCTG GTGTTGAGGT TGAGGTCACC ATCGCCGACT CGTAGATCGA 
CTCTCTTACT TCTGTTTTTG CTCTTTCTCT TTTAAGAAAC AAATGTTTTG 
TTGTACTGAA ACTCAAGTTC TTTTGTTTTC TTAATTGAAT AGATTTTGAA 
GATTGATATT ATAATTATGT TCTCTACTCT CATATTAATA GCCTTAAACA 
AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT3G45030.1 [+] show detail - Ribosomal protein S10p/S20e family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Ribosomal protein S10, eukaryotic/archaeal 1.7e-53
HMMPanther 40S RIBOSOMAL PROTEIN S20 1.3e-78
HMMPanther Ribosomal protein S10 1.3e-78
HMMPfam Ribosomal protein S10 2.3e-30
superfamily Ribosomal protein S10 8.7e-29
FPrintScan Ribosomal protein S10 9e-14
FPrintScan Ribosomal protein S10 9e-14
FPrintScan Ribosomal protein S10 9e-14
PatternScan Ribosomal protein S10, conserved site 0
Gene3D Ribosomal protein S10 1.4e-29

See the detailed result >

AT3G45030.1

Model type
Protein coding
Short Description
Ribosomal protein S10p/S20e family protein
Computational Description
Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, small ribosomal subunit; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: Ribosomal protein S10p/S20e family protein (TAIR:AT5G62300.2); Has 7518 Blast hits to 7518 proteins in 2618 species: Archae - 271; Bacteria - 4774; Metazoa - 380; Fungi - 145; Plants - 182; Viruses - 0; Other Eukaryotes - 1766 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-19-N16 introduced

  • F17809 - seed::present in fewer numbers in organism / flower::abnormal / fruit::decreased length / stem::abnormal / rosette leaf::dark green / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::epinastic / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / cauline leaf::dark green / cauline leaf::dark green / cauline leaf::abnormal / fruit::decreased length

Mutant lines with disrupted or induced

1 mutant line founds