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  3. RAFL05-19-P23

RAFL05-19-P23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01372)

full reading [+] show sequence

Nucleotide sequence: RAFL05-19-P23 - full reading 
GAAAACCAGA CTAAAGGGCA GAAACGTCAT TTGACAAAAA GAAGGATGAT 
TCTCTCCTTC CTCTTTCCCC AATGCAAAGA AAAAGCATTA TAGACTTTTC 
AAGTTTTCCG ATATAGGCAC GAAATCGCTA TTTCTCTCTT CGACGAAGCT 
TTGATAATTT GATCTCAATC GATCGATTCT ATTGAGAATT TGTGTACCTG 
TTTTCTTATA AGGTTAACTA AGGATTGTGG AATCAGAAGT GTTGTGTTTT 
TGTGATCGGA GATTATGGAT TGGGGAAACG TAACGGTTGA TGATCTCTTC 
GATGCTCTCC GAGAAGTTGA CTGGTCGTCT CCGCCGCGTC CTCCGTCTGA 
GTTCTTCTCA AGGTTCACCG TTCCTAAATC TGTCCCTAAA TGGGATAGTC 
GCCTCAAGTG CAATCTCTAC TACTACCGAA CAAACTATTT CATCATGATC 
GTCGTTATAC TTGGATTGGG AGTCCTTACA AGGCCTTTAG CGATCTTCGC 
TGCGCTTTTG ACAGCATTAA GTTTGGCATT TCTAAATGAC AGCTTTGCAG 
GTTCTTTTAG TGAGAAGGCG ACACGAACCG TCAGAAGATT CTCTCCACAG 
TTAGCTGCTA AAATGAGACC TCCTTTGACA CCTGTCACTC GTGGGCGTCC 
ATCATCAAAG AGAGCAATCC ATGTATGTGG TCAACCCCGT TGGGTTTTTG 
TCTTGACATG CTCACTTGTG AGTTTTGCTC TTTGGTATAT TTCCTCTGGT 
TTGCTCAGAG TCTCGGTTGC GCTACTCATT GCACATCTTG CAACAATTCT 
TCATGCAAGC TTGAGAACAC CGAACTTGAA GGCACGTTTT AACACATTTA 
GGGAGGAATT CCGAGCAGTA TGGCGTAACT ACAGCGAGAT TTAGAGTAAT 
TCTTTGGCAG CTTGTACCAC CATGATCGTG TTCTGCTGAG GACATAACGC 
TGTAAAGACC AAACTTACTG CCTTTCTCCA AGATAAACCC GGTTTCGTTA 
ACACTGTACT ATGGATGTTC AATCTGGATT TGTTGCTCAA TGACTGGGAT 
CATCTGTTTT TTCTTTGATT TGAGATTTGA GCTCTGAGCT CTTTTTGCTA 
GCAAAATCCT CTCTTTTTTT TTTTGCTAAA GACTTGTAAA GCTAGCTTTG 
TTGTTCTTCG TTCTAACACA AAACCCTTTG TGTAAAGTCC TAGAATCGTT 
TAATAGCTTG CATTTTTTTC CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT5G02040.1 [+] show detail - prenylated RAB acceptor 1.A1
    E-value: 0; Score: 99.59

 

InterPro Scan Digest

Program Description E-value
HMMPanther PRA1 PROTEIN 0.0000011
HMMPfam Prenylated rab acceptor PRA1 1.6e-37

See the detailed result >

AT5G02040.1

Model type
Protein coding
Short Description
prenylated RAB acceptor 1.A1
Computational Description
prenylated RAB acceptor 1.A1 (PRA1.A1); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G11402.2); Has 236 Blast hits to 236 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 12; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-19-P23 introduced

  • F12748 - Specific phenotypes were NOT observed.
  • F16815 - Specific phenotypes were NOT observed.
  • F18514 - Specific phenotypes were NOT observed.
  • F18809 - Specific phenotypes were NOT observed.
  • F22222 - Specific phenotypes were NOT observed.
  • F27434 - stem::dark green / cauline leaf::dark green

Mutant lines with disrupted or induced

15 mutant lines found