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RAFL05-20-N18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02804)

full reading [+] show sequence

Nucleotide sequence: RAFL05-20-N18 - full reading 
ATCTCACTTT CTCCATCTTA AAACTCTTTC TTGTATTTAT TTTCCTCCCA 
AAAAACATCT TTAAGAGTCC TCATGGCGAT GTCTTTATCA GGAGCTGTTC 
TCAGTGGCAT GGGTTCTTCT TTCCACAACG TAGGAGCAAA GCAGAGTGGT 
GTTGGTACCG TCAGAGTTGG CCGGAAGAGT GAGCTCGTCG TCGTTGCTCA 
GCGCAAGAAG TCGTTGATAT ACGCCGTTAA AAGTGACGGC AACATCCTCG 
ATGACCTCAA CGAAGCCACA AAGAAAGCTT CTGATTTCGT GACGGATAAG 
ACGAAGGAGG CCTTGGCGGA TGGCGAGAAA ACAAAAGACT ACATTGTTGA 
GAAAACCATT GAAGCCAATG AAACTGCGAC TGAGGAAGCT AAGAAAGCTT 
TGGATTATGT GACTGAGAAA GGAAAAGAAG CCGGAAATAA GGCGGCTGAG 
TTCGTAGAGG GTAAAGCAGA AGAGGCTAAG AATGCCACAA AGTCCTGATT 
CAACCACTCA TGTAGTCATG TTCAATAGTT TACAATAAGA TCAGTTTGTT 
GTAATTTCTT TTTCACCATT TGAAATGAAG AGCTGTTAAT TACAGAAAAA 
AAAAAAAAAA A

Gene models with high sequence identity

  1. AT2G42530.1 [+] show detail - cold regulated 15b
    E-value: 0; Score: 99.83

 

InterPro Scan Digest

See the detailed result >

AT2G42530.1

Model type
Protein coding
Short Description
cold regulated 15b
Computational Description
cold regulated 15b (COR15B); INVOLVED IN: response to cold, defense response to fungus; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cold-regulated 15a (TAIR:AT2G42540.2); Has 194 Blast hits to 148 proteins in 43 species: Archae - 0; Bacteria - 18; Metazoa - 5; Fungi - 6; Plants - 155; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-20-N18 introduced

  • F01130 - seed::increased size / seed::increased length
  • F03719 - Specific phenotypes were NOT observed.
  • F09512 - Specific phenotypes were NOT observed.
  • F10727 - seed::increased size / seed::increased length
  • F19635 - Specific phenotypes were NOT observed.
  • F22444 - Specific phenotypes were NOT observed.
  • F28133 - Specific phenotypes were NOT observed.
  • F28801 - Specific phenotypes were NOT observed.
  • F29807 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found