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  3. RAFL05-20-N19

RAFL05-20-N19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02805)

full reading [+] show sequence

Nucleotide sequence: RAFL05-20-N19 - full reading 
GAATCTCTCT TTCTTCTTCT TTTTCTCTCG CTCCAAATTC CATGTCTGTG 
TCTCTTTCCT CCTCCGCCGT ATAATTCGCC GGAAAAATTA TCTCCCTTTG 
ATTTTCGAAC ACCTCCGCGA ACTATGCGCT TCTTTTGCCC TTATCCTCCA 
ACTACTTGTC GGATCTGCAA TTCTTCTTGT CAATTCCCAA CCCTAATCGG 
AGCTAATCAC ACCTCTGCTC GTTTCTCTTC TCGTTAGTCT CTGCTCCATC 
TCCTCCTCAG ATTTAGGGAT ATTTGCTTCC AATTTAACAA ACAAACCAAG 
AGCTATTCTT TCGTTCTTTA TTCTCTCCGT CTTGTAAAGT AGTTTTAGCA 
GTGAGATACA TACAAATGGA GACTTCCATG GGGAAACCCA GCTTCTTACG 
GAATATAATG GTTCGCGTGC TTCTCTTTGG TGTTCTTATC ATCGTTGTGA 
GATTTGCTTA TGTTGTCACC ATCACCGGTG AATCATGCAA TCGCGGCGAC 
TTCTGCTTCT TCTCTCTCCC TGAGAATCTC AACTTTGTCA TCTCCGGTGC 
TGCCTCCGGC TCTTCTGCTA TCGACGCCAT CAGATCTACT TCCCCTGGGG 
ATGATCTCTA CACCACCAGG GATTGGATCA AATCCGTTCA GTTTTACTCC 
TCCATCTTCC AGGATCTGAT CGCCGACGGT TATCTATCGC CTGAATCGAA 
GACGCTTTGT GTAGAGACGG CGATTGGACA AGAGGTTCAC TCGCTCAGAG 
AGATTGGGGT GAAGAACTCC GTCGGGATCT CTAAGAAAGC TTCTAGGCCG 
TTGGTGGTTA GAGGCGAGGG ACATGCTATT CCCTTTGAGG ATAACGCTTT 
CGATTTTGTA TTCTCCGGTG GTGACCGCCT TGGGAAGTCG TTGAAGCAGT 
TGGAATTCGC CGATGAGATT ACTCGAACAC TGAAACCCGA AGGGTTTGCG 
GTGGTTCATG TTGGGGCTAC AGATACGTAC AGTTTCAATT CATTCCTTGA 
TTTGTTTAAT TCTTGCAGAT TGGTGAAGAT GCGTGATATC GATGGTTTTG 
ATCCTTCGAT GCCTCATATC AGAGAATTTG TTATTCAGAA ATACTCAGAG 
ATTGATGGTG GTGGTCATCA CCACCGTGGT GGTGGTGATT CTGGTGGAAA 
GTGCTGGATT CCGGGTTACA AAAGAGATTT GATTCGGGAT GCAGAGCCAC 
TGATTCAAGA GGAGCCTCTT AAGCCATGGA TTACACTTAA GAGGAACATC 
AAGAATATTA AATATGTGCC TTCTATGGTT GATATACGTT TCAAGAGTAG 
ATACGTTTAC GTTGATGTTG GTGCTAGAAG TTATGGATCC AGTATTGGGA 
GTTGGTTCAA GAAAGAGTAC CCTAAGCAGA ACAAAACTTT TGATGTTTTC 
GCCATTGAGG CTGACAAAGC CTTTCACGAA GAGTATAAGA TAAAGAAGAA 
GGTGAACCTG TTGCCATACG CAGCGTGGGT GAGGAACGAG ACGTTATCGT 
TTGAGATCAA TCACGATCCG GGAAAGGAAG TGGAAGCCAA AGCAAAGGGC 
AGGGGGATGG GCAGAATCCA GCCGGTTAAA AAGTCTGACT CGAGTGACTT 
AGCTGGAGAG GTGAATTTGA TTCAAGGGTT TGATTTCGCT GACTGGTTGA 
AGAAGAGTGT GAGAGAGAGG GACTTTGTTG TGATGAAGAT GGATGTTGAA 
GGAACCGAAT TCGATCTGAT CCCGAGGCTA ATCAAGACAG GAGCGATTTG 
TCTAATAGAT GAGTTGTTCC TTGAATGCCA TTACAACAGG TGGCAGAGAT 
GTTGTCCTGG TCAAAGGAGC CAAAAGTACA ACAAGACTTA TAACCAATGC 
TTAGAGCTCT TCAATTCGCT CAGACAAAGA GGGGTGCTTG TCCATCAATG 
GTGGTAATGG TTAGGATGCT GCATAAAAGT CTCCTTCTTC TATGCATTTG 
GTGAAAAATG TACTTTCTTC TTCTAGAATA TATAAAGCGG GATATTGTAG 
GTTTCTATTA AAAATACGTT GTCTGTGCTG AAATTCCCTT TTACTGTAAG 
AAAAAAGAAG TTTAGCTTTA AATGGAAATT TGAGTTTCTT TTACGCTTAA 
AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT5G01712.1 [+] show detail - conserved peptide upstream open reading frame 48
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Methyltransferase type 11 6.4e-05
HMMTigr Methyltransferase FkbM 2.8e-05

See the detailed result >

AT5G01712.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 48
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF48 represents a conserved upstream opening reading frame relative to major ORF AT5G01710.1
Computational Description
conserved peptide upstream open reading frame 48 (CPuORF48); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-20-N19 introduced

  • F12435 - rosette leaf::decreased size / rosette leaf::present in greater numbers in organism / stem::decreased thickness / cauline leaf::epinastic / cauline leaf::abnormal / fruit::decreased length / stem::abnormal

Mutant lines with disrupted or induced

2 mutant lines found