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RAFL05-21-A06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17140)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-A06 - full reading 
GGCTTCCCCT TGGCCGGCTA TAAATCGATA ACCTCACCGA TAAATCCTCT 
ATTCATCATC CACAACAAAC CTCTTCTTCA GTCTGATAGA GATCTCACGT 
TTCAAACAAC AAGAATGGCG TTCCCTAAGG TATACTTCGA CATGACCATC 
GACGGCCAGC CCGCGGGAAG GATCGTGATG GAGCTGTACA CCGATAAGAC 
TCCCAGGACT GCCGAGAATT TCAGAGCTCT CTGCACCGGA GAGAAAGGTG 
TTGGCGGTAC CGGAAAACCC CTTCACTTCA AGGGATCTAA GTTTCACCGT 
GTGATCCCTA ACTTCATGTG CCAGGGAGGA GATTTCACCG CCGGGAACGG 
AACAGGCGGT GAGTCGATCT ACGGGAGCAA GTTCGAGGAC GAGAATTTCG 
AGAGGAAGCA CACCGGACCG GGGATCCTGT CGATGGCGAA CGCCGGTGCA 
AACACGAACG GATCTCAGTT CTTCATCTGC ACCGTGAAGA CCGATTGGCT 
TGATGGGAAG CACGTGGTGT TTGGGCAGGT CGTGGAAGGC TTAGACGTGG 
TAAAGGCCAT CGAGAAGGTT GGATCATCAT CTGGAAAGCC GACGAAGCCT 
GTGGTTGTTG CCGATTGTGG TCAGCTCTCT TAGGATCTTC CTATCATCAT 
CCTTAATTTA GCATCATCGT CGTCATTGTG GTGTCTCTTT ATGCTTTTGC 
TTTTGTTATG GAGTCTTTTT AAAATTTGTA GTCATAAGTT TGGTGTGTGT 
TCTCATGGGA ACATATATAA ACTTGCCCCT TTAATAAAAA AACAAA

Gene models with high sequence identity

  1. AT4G38740.1 [+] show detail - rotamase CYP 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-41
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-41
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-41
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-41
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-41
Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.7e-69
PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 46.772
HMMPanther CYCLOPHILIN 3.9e-123
HMMPanther CYCLOPHILIN 3.9e-123
HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.6e-48
superfamily Cyclophilin-like 4.2e-77

See the detailed result >

AT4G38740.1

Model type
Protein coding
Short Description
rotamase CYP 1
Curator Summary
Encodes cytosolic cyclophilin ROC1.
Computational Description
rotamase CYP 1 (ROC1); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, response to cadmium ion, signal transduction; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 16514 Blast hits to 16480 proteins in 2670 species: Archae - 108; Bacteria - 6825; Metazoa - 2927; Fungi - 1383; Plants - 1289; Viruses - 4; Other Eukaryotes - 3978 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-A06 introduced

  • F06639 - rosette leaf::decreased size / whole plant::decreased height / seed::present in fewer numbers in organism
  • F11244 - Specific phenotypes were NOT observed.
  • F26517 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found