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RAFL05-21-B19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02809)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-B19 - full reading 
AAACCCATTT AGCTTTTGAC TTGTGTTGTT CTTCGTCGCT CTGTCTTAAT 
ATTCCCTCAC CAACTCGTTT CATTTGGGGA CAAGCTTCTT CGATTTTCCT 
CTCAGACCAA TCGGGCTTTC GAATCCCATC AGTAGAAATG GCTACATCAA 
GGTTCCAAGC ATTCTTGAAC AGTCCCATTG GCCCAAAAAC AACTCATTTC 
TGGGGGCCTA TCGCTAATTG GGGTTTTGTT GCTGCTGGTT TGGTGGATAT 
GCAAAAGCCC CCTGAAATGA TTTCTGGAAA CATGTCGTCA GCTATGTGCG 
TTTTACTCTG CATTGTTCAT GAGGTTTGCC TGGATGGTGC AACCACGTAA 
CTATTTGCTA CTTGCGTGCC ATGCATCAAA CGAGACTGTA CAACTCTATC 
AGCTCTCACG TTGGGCTAGA GCCCAGGGGT ATTTATCCTC CAAGAAAGAA 
GAGGAGAAAC CATCTCAGTA AACCAAAATG AGGAAAGGTT TCTTCAACGC 
TGCTTCAGAA TTTGTTCGTG GGAATTACTG AATCCATCCA TTTGATTTTC 
TTTCGAAACG TGTTTTGTAT TGTGTCCCCA AGCTATGGTT GCTTTACTTG 
TTGGATCATT CACTAACATT ATATCCTTTG TTTTCATAAG TAACCGCTTG 
TAATAAAATT TGGGACCAGT CGTCATTCCA CATTCGTGTT CACACAAAAA 
AGGGGTTCAA ACATGAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT5G20090.1 [+] show detail - Uncharacterised protein family (UPF0041)
    E-value: 0; Score: 99.86

 

InterPro Scan Digest

Program Description E-value
HMMPfam Uncharacterised protein family UPF0041 1.6e-13
HMMPfam Uncharacterised protein family UPF0041 2.1e-18
HMMPanther BRAIN PROTEIN 44-LIKE 1e-19
HMMPanther UPF0041 BRAIN PROTEIN 44-RELATED 1e-19
HMMPanther UPF0041 BRAIN PROTEIN 44-RELATED 2.4e-18

See the detailed result >

AT5G20090.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0041)
Computational Description
Uncharacterised protein family (UPF0041); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0041) (TAIR:AT4G14695.1); Has 929 Blast hits to 928 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 402; Fungi - 251; Plants - 173; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-B19 introduced

  • F02215 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds