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RAFL05-21-C12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01322)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-C12 - full reading
AACACACGCC TCTAATCTCC GCGCACACAC ACACACCCTC ACGAAGAAGA 
AGAAGACGAA GAAGAATCAA TGGCTTCTGT TATCTCTTCC TCTCCTTTTC
TATGCAAATC ATCCTCCAAG AGTGATTTGG GGATTTCTTC GTTTCCTAAA
TCTTCTCAGA TTTCGATTCA TCGATGTCAG AAGAAATCGA TCTCACGGAA
GATTGTTTCC GTTATGGCTC CTCAAAAGGA TCGGTCTCCT GGAACTACAG
GATCGGTGAA AACTGGGATG ACAATGACGG AGAAGATTCT AGCTAGAGCT
TCGGAGAAGT CATTAGTGGT TCCTGGTGAT AACATTTGGG TTAATGTTGA
TGTTCTTATG ACTCATGATG TTTGTGGTCC TGGTGCTTTT GGTATCTTCA
AGAGAGAGTT TGGTGAAAAA GCCAAGGTTT GGGATCCGGA GAAGATTGTT
GTGATTCCGG ATCATTATAT TTTCACTGCT GATAAGCGTG CAAACCGGAA
TGTTGACATC ATGAGGGAGC ATTGCAGGGA ACAGAATATT AAGTATTTCT
ATGATATCAC TGACCTTGGA AATTTTAAGG CTAATCCTGA CTACAAAGGT
GTTTGCCATG TTGCACTTGC ACAAGAAGGT CATTGCAGGC CAGGAGAGGT
TTTGTTAGGA ACAGACTCAC ACACTTGTAC TGCTGGAGCA TTTGGTCAAT
TTGCTACAGG GATTGGAAAC ACTGATGCAG GTTTTGTGTT AGGCACTGGA
AAAATCCTCC TTAAGGTTCC ACCAACGATG AGGTTTATCT TGGATGGTGA
GATGCCTAGT TATTTGCAAG CAAAGGATCT GATTTTACAA ATTATTGGTG
AAATATCTGT TGCTGGTGCA ACTTACAAGA CGATGGAGTT CAGTGGTACA
ACTATCGAAA GTCTGAGTAT GGAAGAAAGA ATGACATTGT GCAACATGGT
TGTGGAAGCT GGGGGAAAGA ATGGTGTCAT CCCTCCTGAT GCGACGACAT
TAAATTATGT TGAGAATAGG ACATCTGTAC CATTTGAGCC AGTATATAGT
GATGGAAATG CAAGCTTTGT CGCAGATTAT AGATTTGACG TGTCAAAGCT
GGAGCCTGTG GTGGCTAAGC CTCATTCTCC TGACAACCGA GCTCTAGCTA
GAGAATGCAA AGACGTGAAA ATTGACAGAG TATACATCGG TTCTTGTACT
GGTGGGAAGA CAGAGGATTT TATGGCTGCA GCTAAACTTT TCCACGCAGC
AGGAAGAAAG GTCAAAGTTC CAACTTTCCT TGTCCCGGCT ACTCAGAAGG
TGTGGATGGA TGTGTATGCT CTCCCGGTAC CTGGAGCAGG TGGAAAGACA
TGTGCGCAGA TCTTTGAAGA AGCTGGCTGT GACACACCAG CCAGCCCTAG
CTGTGGTGCT TGCCTTGGTG GCCCAGCAGA CACCTACGCT CGCTTGAATG
AACCTCAAGT GTGTGTCTCA ACGACAAACA GGAACTTCCC CGGTCGGATG
GGACACAAAG AAGGGCAAAT TTACTTAGCG TCTCCTTACA CTGCTGCAGC
CTCGGCTTTA ACCGGCCGTG TCGCTGACCC AAGGGAGTTC TTGCAGTAGG
CTAATGTAAT GGCTTCGTGT GAAAAATCAT ATGCTATGCA TCGACGAAAT
ATTGCTAAAT GATGGGGCAT TGTGAACTAT ATGTATGTAT TTTCCTTATT
TCGCTGTTGG ACTTGATAGT TTCAAGCACT ATGTCAAACT TTGATGTTTT
GAGTTTGAAA TAATAAAAGA GAGAAAAAGA GTGAGTTAGA TTAAAAAAAA
AAAAAAAA

Gene models with high sequence identity

  1. AT4G13430.1 [+] show detail - isopropyl malate isomerase large subunit 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 9.4e-17
FPrintScan Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 9.4e-17
FPrintScan Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 9.4e-17
FPrintScan Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 9.4e-17
FPrintScan Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 9.4e-17
HMMPanther Homoaconitase/3-isopropylmalate dehydratase, small/large subunit 5.9e-194
HMMPanther Aconitase-like core 5.9e-194
Gene3D Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 1.7e-28
Gene3D Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 3.5e-28
Gene3D Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 2.9e-39
HMMTigr Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup 2e-143
superfamily Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 2.3e-124
HMMPfam Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 7.9e-53
HMMPfam Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 2.2e-19

See the detailed result >

AT4G13430.1

Model type
Protein coding
Short Description
isopropyl malate isomerase large subunit 1
Curator Summary
Encodes methylthioalkylmalate isomerase.
Computational Description
isopropyl malate isomerase large subunit 1 (IIL1); FUNCTIONS IN: lyase activity, intramolecular transferase activity, transferring hydroxy groups; INVOLVED IN: glucosinolate biosynthetic process, response to cadmium ion, metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha (InterPro:IPR001030), Homoaconitase/3-isopropylmalate dehydratase, small/large subunit (InterPro:IPR015936), Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup (InterPro:IPR006251), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 (InterPro:IPR015932), Aconitase-like core (InterPro:IPR015937), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 (InterPro:IPR015931); BEST Arabidopsis thaliana protein match is: aconitase 2 (TAIR:AT4G26970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-C12 introduced

  • F05922 - sporophyte vegetative stage::decreased speed / root::present in greater numbers in organism / rosette leaf::desaturated green / rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::present in fewer numbers in organism / rosette leaf::abnormal / stem::desaturated green / cauline leaf::decreased width / stem::abnormal / cauline leaf::epinastic / cauline leaf::desaturated green / whole plant::decreased height / stem::present in greater numbers in organism / stem::abnormal
  • F08748 - Specific phenotypes were NOT observed.
  • F21708 - rosette leaf::dark green / rosette leaf::abnormal / stem::abnormal

Mutant lines with disrupted or induced

3 mutant lines found