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RAFL05-21-C12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01322)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-C12 - full reading 
AACACACGCC TCTAATCTCC GCGCACACAC ACACACCCTC ACGAAGAAGA 
AGAAGACGAA GAAGAATCAA TGGCTTCTGT TATCTCTTCC TCTCCTTTTC 
TATGCAAATC ATCCTCCAAG AGTGATTTGG GGATTTCTTC GTTTCCTAAA 
TCTTCTCAGA TTTCGATTCA TCGATGTCAG AAGAAATCGA TCTCACGGAA 
GATTGTTTCC GTTATGGCTC CTCAAAAGGA TCGGTCTCCT GGAACTACAG 
GATCGGTGAA AACTGGGATG ACAATGACGG AGAAGATTCT AGCTAGAGCT 
TCGGAGAAGT CATTAGTGGT TCCTGGTGAT AACATTTGGG TTAATGTTGA 
TGTTCTTATG ACTCATGATG TTTGTGGTCC TGGTGCTTTT GGTATCTTCA 
AGAGAGAGTT TGGTGAAAAA GCCAAGGTTT GGGATCCGGA GAAGATTGTT 
GTGATTCCGG ATCATTATAT TTTCACTGCT GATAAGCGTG CAAACCGGAA 
TGTTGACATC ATGAGGGAGC ATTGCAGGGA ACAGAATATT AAGTATTTCT 
ATGATATCAC TGACCTTGGA AATTTTAAGG CTAATCCTGA CTACAAAGGT 
GTTTGCCATG TTGCACTTGC ACAAGAAGGT CATTGCAGGC CAGGAGAGGT 
TTTGTTAGGA ACAGACTCAC ACACTTGTAC TGCTGGAGCA TTTGGTCAAT 
TTGCTACAGG GATTGGAAAC ACTGATGCAG GTTTTGTGTT AGGCACTGGA 
AAAATCCTCC TTAAGGTTCC ACCAACGATG AGGTTTATCT TGGATGGTGA 
GATGCCTAGT TATTTGCAAG CAAAGGATCT GATTTTACAA ATTATTGGTG 
AAATATCTGT TGCTGGTGCA ACTTACAAGA CGATGGAGTT CAGTGGTACA 
ACTATCGAAA GTCTGAGTAT GGAAGAAAGA ATGACATTGT GCAACATGGT 
TGTGGAAGCT GGGGGAAAGA ATGGTGTCAT CCCTCCTGAT GCGACGACAT 
TAAATTATGT TGAGAATAGG ACATCTGTAC CATTTGAGCC AGTATATAGT 
GATGGAAATG CAAGCTTTGT CGCAGATTAT AGATTTGACG TGTCAAAGCT 
GGAGCCTGTG GTGGCTAAGC CTCATTCTCC TGACAACCGA GCTCTAGCTA 
GAGAATGCAA AGACGTGAAA ATTGACAGAG TATACATCGG TTCTTGTACT 
GGTGGGAAGA CAGAGGATTT TATGGCTGCA GCTAAACTTT TCCACGCAGC 
AGGAAGAAAG GTCAAAGTTC CAACTTTCCT TGTCCCGGCT ACTCAGAAGG 
TGTGGATGGA TGTGTATGCT CTCCCGGTAC CTGGAGCAGG TGGAAAGACA 
TGTGCGCAGA TCTTTGAAGA AGCTGGCTGT GACACACCAG CCAGCCCTAG 
CTGTGGTGCT TGCCTTGGTG GCCCAGCAGA CACCTACGCT CGCTTGAATG 
AACCTCAAGT GTGTGTCTCA ACGACAAACA GGAACTTCCC CGGTCGGATG 
GGACACAAAG AAGGGCAAAT TTACTTAGCG TCTCCTTACA CTGCTGCAGC 
CTCGGCTTTA ACCGGCCGTG TCGCTGACCC AAGGGAGTTC TTGCAGTAGG 
CTAATGTAAT GGCTTCGTGT GAAAAATCAT ATGCTATGCA TCGACGAAAT 
ATTGCTAAAT GATGGGGCAT TGTGAACTAT ATGTATGTAT TTTCCTTATT 
TCGCTGTTGG ACTTGATAGT TTCAAGCACT ATGTCAAACT TTGATGTTTT 
GAGTTTGAAA TAATAAAAGA GAGAAAAAGA GTGAGTTAGA TTAAAAAAAA 
AAAAAAAA

Gene models with high sequence identity

  1. AT4G13430.1 [+] show detail - isopropyl malate isomerase large subunit 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 9.4e-17
FPrintScan Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 9.4e-17
FPrintScan Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 9.4e-17
FPrintScan Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 9.4e-17
FPrintScan Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 9.4e-17
HMMPanther Homoaconitase/3-isopropylmalate dehydratase, small/large subunit 5.9e-194
HMMPanther Aconitase-like core 5.9e-194
Gene3D Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 1.7e-28
Gene3D Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 3.5e-28
Gene3D Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 2.9e-39
HMMTigr Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup 2e-143
superfamily Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 2.3e-124
HMMPfam Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 7.9e-53
HMMPfam Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha 2.2e-19

See the detailed result >

AT4G13430.1

Model type
Protein coding
Short Description
isopropyl malate isomerase large subunit 1
Curator Summary
Encodes methylthioalkylmalate isomerase.
Computational Description
isopropyl malate isomerase large subunit 1 (IIL1); FUNCTIONS IN: lyase activity, intramolecular transferase activity, transferring hydroxy groups; INVOLVED IN: glucosinolate biosynthetic process, response to cadmium ion, metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha (InterPro:IPR001030), Homoaconitase/3-isopropylmalate dehydratase, small/large subunit (InterPro:IPR015936), Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup (InterPro:IPR006251), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 (InterPro:IPR015932), Aconitase-like core (InterPro:IPR015937), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 (InterPro:IPR015931); BEST Arabidopsis thaliana protein match is: aconitase 2 (TAIR:AT4G26970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-C12 introduced

  • F05922 - sporophyte vegetative stage::decreased speed / root::present in greater numbers in organism / rosette leaf::desaturated green / rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::present in fewer numbers in organism / rosette leaf::abnormal / stem::desaturated green / cauline leaf::decreased width / stem::abnormal / cauline leaf::epinastic / cauline leaf::desaturated green / whole plant::decreased height / stem::present in greater numbers in organism / stem::abnormal
  • F08748 - Specific phenotypes were NOT observed.
  • F21708 - rosette leaf::dark green / rosette leaf::abnormal / stem::abnormal

Mutant lines with disrupted or induced

3 mutant lines found