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RAFL05-21-D22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02811)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-D22 - full reading 
TGACACACAA TCCAATCAAA ACACACAGAG AGAAGAAAAA CTCAGAAGAA 
AAGCCAAAGA GTGAAACAAA AATGGCGTCG ACGACTCTCT CAATCGCAAC 
AACAATCCGT TCCTCATCTT ATCCTACTCT CGCTTCCATC AATCACTTCC 
CTTCCCGAAC CACCACCATC GAATTCCCCT CTCGCTTCGG TGGTGGTTCA 
TCATCCACAT TGACCCACCG TGCAACCCAT CTCCGTCCAA TCGCCGCCGT 
CGAAGCTCCG GAGAAAATCG AGAAGATCGG ATCCGAAATC TCATCCCTAA 
CCCTCGAAGA AGCTCGTATC CTCGTCGACT ATCTCCAAGA CAAATTCGGT 
GTCTCCCCAC TCTCTTTAGC CCCCGCAGCA GCGGCGGTTG CTGCTCCAGC 
CGACGGTGGC GCGGCGGCTG TAGTGGAGGA GCAAACAGAG TTCGATGTGG 
TTATCAATGA AGTTCCGAGT AGTTCTCGTA TTGCAGTAAT TAAAGCTGTT 
AGGGCTTTGA CTAGCTTGGC GTTGAAGGAA GCTAAGGAGC TAATCGAAGG 
ATTACCAAAG AAGTTTAAAG AAGGTATCAC TAAAGATGAA GCTGAAGAAG 
CTAAGAAGAC TCTTGAAGAA GCTGGTGCTA AAGTCTCCAT TGCTTAAGGT 
TTTTATAAAA AAAAAAAAAG AAGTTGTTAT CTTTTCTGGA ATTTGATTGG 
TCTTTTGTGT TGTTTAGTAT AGTTTGCGTC TGGAATTGTT GAGAAATTGT 
TGTAATTTGA ATCACATTTG GTTTCCCATT AGCTGATTTC GCCATTGATG 
TGAGCTTTTT GGTAGCTGCA CATAACATGT TTGTTGAAAT GCCTAAATGA 
GGCAAATCAC TCGTAGTTGC TTAACATGAA ACAGAGTTAA AAATAAAAAA 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT3G27830.1 [+] show detail - ribosomal protein L12-A
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Ribosomal protein L7/L12, C-terminal 2.3e-26
HMMPanther Ribosomal protein L12, chloroplast 9.9e-90
HMMPanther RIBOSOMAL PROTEIN L7/L12 9.9e-90
BlastProDom Ribosomal protein L7/L12, C-terminal 4e-18
HAMAP Ribosomal protein L7/L12 22.128
superfamily Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like 6.4e-22
superfamily Ribosomal protein L7/L12, oligomerisation 7.3e-13
Gene3D Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like 3.3e-21
Coil coiled-coil 0
HMMTigr Ribosomal protein L7/L12 1.2e-34

See the detailed result >

AT3G27830.1

Model type
Protein coding
Short Description
ribosomal protein L12-A
Curator Summary
50S ribosomal protein L12-A
Computational Description
ribosomal protein L12-A (RPL12-A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, juvenile leaf, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7/L12 (InterPro:IPR000206), Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12-C (TAIR:AT3G27850.1); Has 8536 Blast hits to 8536 proteins in 2747 species: Archae - 0; Bacteria - 5673; Metazoa - 193; Fungi - 128; Plants - 248; Viruses - 0; Other Eukaryotes - 2294 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-D22 introduced

  • F16232 - rosette leaf::decreased size / rosette leaf::abnormal / cauline leaf::desaturated green / whole plant::decreased height / seed::present in fewer numbers in organism / fruit::abnormal / rosette leaf::desaturated green / rosette leaf::decreased size / stem::decreased thickness / stem::desaturated green / cauline leaf::desaturated green / whole plant::decreased height / fruit::abnormal
  • F23445 - Specific phenotypes were NOT observed.
  • F25939 - seed::increased size / seed::increased length
  • F30107 - Specific phenotypes were NOT observed.
  • F30211 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / rosette leaf::abnormal / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

5 mutant lines found