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RAFL05-21-G15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02816)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-G15 - full reading 
ACTTCTCATA AAAAAGGTCA TTTCAAAAAA AAATCAGAAA CCGTCAAAAA 
GCCACCGTTG ATATTTCTTC CTTGTTGCTT CTTCAATGGC GTCGTTCGAC 
GAAGCACCTC CCGGAAACCC CAAAGCCGGT GAAAAGATCT TCAGAACCAA 
GTGCGCTCAG TGTCACACCG TCGAGAAAGG TGCCGGTCAC AAACAAGGAC 
CGAATTTGAA TGGATTGTTT GGAAGACAAT CTGGAACAAC TCCAGGATAT 
TCTTACTCTG CTGCTAACAA AAGCATGGCT GTGAATTGGG AGGAGAAGAC 
TCTTTACGAT TACTTGTTGA ATCCTAAGAA GTACATCCCT GGAACAAAAA 
TGGTGTTTCC TGGACTGAAA AAACCGCAAG ATCGTGCCGA TCTCATCGCT 
TATTTGAAGG AAGGTACTGC TTAGACAGGC TCGTCCAGAT ATATGAAGCT 
GGCATTTTTT TTTCTCACAG CTAAATAAAA TCAGACCAAA AATATTATGG 
TCATGAACTG CTTTTTGTAT GGTCTTTTAT TCTTTCTTTC TTTTTACGTT 
GTTGAAGAGG CTAGTTGCCT CTTATAAAGT GGAATATTCG TTATTGATGT 
GAAGAGCTAA GAACCAATTT CCACCACGAT AGTCATGAGA TTTTCCTTAA 
AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT4G10040.1 [+] show detail - cytochrome c-2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Cytochrome c domain 7.8e-34
HMMPfam Cytochrome c, class I 0.00000000000091
Gene3D Cytochrome c domain 9.1e-38
ProfileScan Cytochrome c domain 15.638
FPrintScan Cytochrome c, class IA/ IB 2.9e-36
FPrintScan Cytochrome c, class IA/ IB 2.9e-36
FPrintScan Cytochrome c, class IA/ IB 2.9e-36
FPrintScan Cytochrome c, class IA/ IB 2.9e-36
FPrintScan Cytochrome c, class IA/ IB 2.9e-36
FPrintScan Cytochrome c, class IA/ IB 2.9e-36
HMMPanther Cytochrome c, class IA/ IB 2e-72

See the detailed result >

AT4G10040.1

Model type
Protein coding
Short Description
cytochrome c-2
Curator Summary
Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers.
Computational Description
cytochrome c-2 (CYTC-2); CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: CYTOCHROME C-1 (TAIR:AT1G22840.1); Has 4050 Blast hits to 4028 proteins in 748 species: Archae - 0; Bacteria - 1493; Metazoa - 643; Fungi - 252; Plants - 160; Viruses - 0; Other Eukaryotes - 1502 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-G15 introduced

  • F01846 - Specific phenotypes were NOT observed.
  • F08828 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

3 mutant lines found