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Full-length cDNAs
RAFL05-21-H04

RAFL05-21-H04

RIKEN Arabidopsis Full-length cDNAs

TGGTACCAAG AAGATTGCGG AGAGTCGTGA AAAGTTTTGA GCTTTGATCA 
CTCACTCACT AGTAATGGAG GCTCTTCAAT TTTCCAGCGT GAATAGAGTT 
CCTTGTACTC TGAGCTGTAC CGGAAATAGG AGAATTAAGG CTGCCTTCAG 
CTCTGCGTTC ACCGGTGGCA CCATCAATTC AGCTTCTCTG TCCTCCTCTA 
GGAATCTCTC CACGCGAGAG ATATGGAGTT GGGTGAAATC GAAGACTGTT 
GTTGGCCATG GAAGATACAG AAGAAGCCAA GTGAGAGCCG AGATGTTTGG 
TCAGTTGACT GGTGGCCTCG AGGCTGCTTG GAGCAAACTC AAAGGCGAAG 
AGGTCTTGAC TAAGGACAAT ATTGCTGAGC CAATGCGGGA TATCAGAAGA 
GCTCTCCTGG AAGCAGATGT GAGTCTCCCA GTTGTTAGAA GGTTTGTTCA 
GTCTGTTAGT GACCAAGCCG TTGGAATGGG TGTCATTCGT GGAGTCAAAC 
CAGATCAGCA ATTGGTCAAG ATTGTACATG ATGAGCTAGT GAAATTGATG 
GGTGGAGAAG TATCTGAGTT ACAGTTTGCT AAATCAGGTC CTACAGTAAT 
ATTGTTGGCT GGGCTCCAAG GAGTTGGAAA GACAACGGTT TGTGCTAAAC 
TAGCTTGTTA CCTAAAGAAG CAGGGAAAAT CTTGCATGCT TATTGCTGGA 
GATGTATACC GACCTGCTGC TATCGATCAA CTTGTCATTT TAGGTGAACA 
GGTTGGTGTG CCGGTTTATA CAGCAGGGAC TGATGTAAAA CCTGCAGATA 
TAGCTAAGCA AGGTCTAAAA GAAGCTAAAA AGAACAATGT TGATGTAGTT 
ATTATGGATA CTGCAGGGAG GCTTCAGATA GATAAAGGCA TGATGGACGA 
ATTAAAAGAC GTGAAGAAAT TTCTGAATCC AACAGAAGTG TTACTAGTTG 
TTGATGCCAT GACTGGACAA GAAGCTGCAG CACTGGTGAC GACATTCAAT 
GTAGAGATAG GAATTACAGG AGCCATTTTG ACAAAGCTAG ATGGTGATTC 
AAGAGGTGGT GCTGCTTTGA GTGTCAAGGA GGTATCAGGA AAACCGATTA 
AACTGGTAGG ACGTGGAGAG CGAATGGAGG ATCTTGAACC CTTTTATCCA 
GATCGAATGG CTGGACGAAT TCTAGGAATG GGAGATGTGC TTTCATTTGT 
AGAGAAGGCA ACAGAAGTTA TGCGTCAAGA AGATGCAGAA GATCTGCAGA 
AGAAGATAAT GAGTGCAAAG TTCGACTTCA ACGATTTTCT AAAGCAGACT 
CGTGCTGTAG CGAAAATGGG TTCGATGACA CGAGTTCTTG GAATGATTCC 
CGGAATGGGG AAAGTGAGTC CAGCACAAAT CCGAGAAGCG GAAAAGAATC 
TTTTAGTCAT GGAAGCAATG ATTGAAGTGA TGACACCCGA GGAAAGAGAG 
AGACCAGAGT TACTAGCAGA ATCTCCAGAG AGAAGAAAAA GAATCGCTAA 
AGATTCAGGA AAGACAGAAC AACAGGTGAG CGCACTTGTA GCACAAATCT 
TCCAAATGAG AGTGAAAATG AAGAACTTGA TGGGAGTGAT GGAAGGAGGA 
TCAATTCCAG CATTAAGCGG TCTCGAGGAC GCATTGAAAG CAGAACAAAA 
GGCTCCACCT GGAACTGCAA GGAGGAAGAG AAAGGCAGAC TCAAGGAAGA 
AATTTGTAGA GTCAGCATCA AGCAAGCCTG GTCCTCGTGG CTTCGGCTCT 
GGTAACTAAA ACTATTTCAG CCCAATTTGG TTAATTTCTA AACGGATTAT 
TTTTTTGTAT AAGTTAATGA ATGAGACAGA AACCTTACAA GTAAAAAAAA 
AAAAAAAA

Gene models with high sequence identity

AT5G03940.1 [+] show detail - chloroplast signal recognition particle 54 kDa subunit
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Signal recognition particle, SRP	2e-234
HMMPanther	GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITIO	2e-234
Gene3D	Signal recognition particle, SRP54 subunit, helical bundle	1.9e-26
Gene3D	no description	6.6e-70
Gene3D	Signal recognition particle, SRP54 subunit, M-domain	3.1e-28
PatternScan	Signal recognition particle, SRP54 subunit, GTPase	0
HMMPfam	Signal recognition particle, SRP54 subunit, GTPase	7.9e-77
HMMPfam	Signal recognition particle, SRP54 subunit, M-domain	1.8e-25
HMMPfam	Signal recognition particle, SRP54 subunit, helical bundle	1e-18
HMMSmart	ATPase, AAA+ type, core	0.000000000026
HMMTigr	Signal recognition particle, SRP	3.4e-224
superfamily	P-loop containing nucleoside triphosphate hyd	2.4e-72
superfamily	Signal recognition particle, SRP54 subunit, M-domain	4.8e-40
superfamily	Signal recognition particle, SRP54 subunit, helical bundle	1.8e-22

See the detailed result >

AT5G03940.1

Model type: Protein coding
Short Description: chloroplast signal recognition particle 54 kDa subunit
Curator Summary: mutant has Yellow first leaves; Chloroplast Signal Recognition Particle Subunit
Computational Description: chloroplast signal recognition particle 54 kDa subunit (CPSRP54); FUNCTIONS IN: 7S RNA binding, protein binding, mRNA binding, GTP binding, signal sequence binding; INVOLVED IN: protein import into chloroplast thylakoid membrane, SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition; LOCATED IN: chloroplast stroma, chloroplast, signal recognition particle, chloroplast targeting, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP (InterPro:IPR004780), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: Signal recognition particle, SRP54 subunit protein (TAIR:AT1G48900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL05-21-H04 introduced

F09246 - Specific phenotypes were NOT observed.
F10333 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

2 mutant lines found