1. Home
  2. Full-length cDNAs
  3. RAFL05-21-H04

RAFL05-21-H04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02818)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-H04 - full reading
TGGTACCAAG AAGATTGCGG AGAGTCGTGA AAAGTTTTGA GCTTTGATCA 
CTCACTCACT AGTAATGGAG GCTCTTCAAT TTTCCAGCGT GAATAGAGTT
CCTTGTACTC TGAGCTGTAC CGGAAATAGG AGAATTAAGG CTGCCTTCAG
CTCTGCGTTC ACCGGTGGCA CCATCAATTC AGCTTCTCTG TCCTCCTCTA
GGAATCTCTC CACGCGAGAG ATATGGAGTT GGGTGAAATC GAAGACTGTT
GTTGGCCATG GAAGATACAG AAGAAGCCAA GTGAGAGCCG AGATGTTTGG
TCAGTTGACT GGTGGCCTCG AGGCTGCTTG GAGCAAACTC AAAGGCGAAG
AGGTCTTGAC TAAGGACAAT ATTGCTGAGC CAATGCGGGA TATCAGAAGA
GCTCTCCTGG AAGCAGATGT GAGTCTCCCA GTTGTTAGAA GGTTTGTTCA
GTCTGTTAGT GACCAAGCCG TTGGAATGGG TGTCATTCGT GGAGTCAAAC
CAGATCAGCA ATTGGTCAAG ATTGTACATG ATGAGCTAGT GAAATTGATG
GGTGGAGAAG TATCTGAGTT ACAGTTTGCT AAATCAGGTC CTACAGTAAT
ATTGTTGGCT GGGCTCCAAG GAGTTGGAAA GACAACGGTT TGTGCTAAAC
TAGCTTGTTA CCTAAAGAAG CAGGGAAAAT CTTGCATGCT TATTGCTGGA
GATGTATACC GACCTGCTGC TATCGATCAA CTTGTCATTT TAGGTGAACA
GGTTGGTGTG CCGGTTTATA CAGCAGGGAC TGATGTAAAA CCTGCAGATA
TAGCTAAGCA AGGTCTAAAA GAAGCTAAAA AGAACAATGT TGATGTAGTT
ATTATGGATA CTGCAGGGAG GCTTCAGATA GATAAAGGCA TGATGGACGA
ATTAAAAGAC GTGAAGAAAT TTCTGAATCC AACAGAAGTG TTACTAGTTG
TTGATGCCAT GACTGGACAA GAAGCTGCAG CACTGGTGAC GACATTCAAT
GTAGAGATAG GAATTACAGG AGCCATTTTG ACAAAGCTAG ATGGTGATTC
AAGAGGTGGT GCTGCTTTGA GTGTCAAGGA GGTATCAGGA AAACCGATTA
AACTGGTAGG ACGTGGAGAG CGAATGGAGG ATCTTGAACC CTTTTATCCA
GATCGAATGG CTGGACGAAT TCTAGGAATG GGAGATGTGC TTTCATTTGT
AGAGAAGGCA ACAGAAGTTA TGCGTCAAGA AGATGCAGAA GATCTGCAGA
AGAAGATAAT GAGTGCAAAG TTCGACTTCA ACGATTTTCT AAAGCAGACT
CGTGCTGTAG CGAAAATGGG TTCGATGACA CGAGTTCTTG GAATGATTCC
CGGAATGGGG AAAGTGAGTC CAGCACAAAT CCGAGAAGCG GAAAAGAATC
TTTTAGTCAT GGAAGCAATG ATTGAAGTGA TGACACCCGA GGAAAGAGAG
AGACCAGAGT TACTAGCAGA ATCTCCAGAG AGAAGAAAAA GAATCGCTAA
AGATTCAGGA AAGACAGAAC AACAGGTGAG CGCACTTGTA GCACAAATCT
TCCAAATGAG AGTGAAAATG AAGAACTTGA TGGGAGTGAT GGAAGGAGGA
TCAATTCCAG CATTAAGCGG TCTCGAGGAC GCATTGAAAG CAGAACAAAA
GGCTCCACCT GGAACTGCAA GGAGGAAGAG AAAGGCAGAC TCAAGGAAGA
AATTTGTAGA GTCAGCATCA AGCAAGCCTG GTCCTCGTGG CTTCGGCTCT
GGTAACTAAA ACTATTTCAG CCCAATTTGG TTAATTTCTA AACGGATTAT
TTTTTTGTAT AAGTTAATGA ATGAGACAGA AACCTTACAA GTAAAAAAAA
AAAAAAAA

Gene models with high sequence identity

  1. AT5G03940.1 [+] show detail - chloroplast signal recognition particle 54 kDa subunit
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Signal recognition particle, SRP 2e-234
HMMPanther GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITIO 2e-234
Gene3D Signal recognition particle, SRP54 subunit, helical bundle 1.9e-26
Gene3D no description 6.6e-70
Gene3D Signal recognition particle, SRP54 subunit, M-domain 3.1e-28
PatternScan Signal recognition particle, SRP54 subunit, GTPase 0
HMMPfam Signal recognition particle, SRP54 subunit, GTPase 7.9e-77
HMMPfam Signal recognition particle, SRP54 subunit, M-domain 1.8e-25
HMMPfam Signal recognition particle, SRP54 subunit, helical bundle 1e-18
HMMSmart ATPase, AAA+ type, core 2.6e-11
HMMTigr Signal recognition particle, SRP 3.4e-224
superfamily P-loop containing nucleoside triphosphate hyd 2.4e-72
superfamily Signal recognition particle, SRP54 subunit, M-domain 4.8e-40
superfamily Signal recognition particle, SRP54 subunit, helical bundle 1.8e-22

See the detailed result >

AT5G03940.1

Model type
Protein coding
Short Description
chloroplast signal recognition particle 54 kDa subunit
Curator Summary
mutant has Yellow first leaves; Chloroplast Signal Recognition Particle Subunit
Computational Description
chloroplast signal recognition particle 54 kDa subunit (CPSRP54); FUNCTIONS IN: 7S RNA binding, protein binding, mRNA binding, GTP binding, signal sequence binding; INVOLVED IN: protein import into chloroplast thylakoid membrane, SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition; LOCATED IN: chloroplast stroma, chloroplast, signal recognition particle, chloroplast targeting, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP (InterPro:IPR004780), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: Signal recognition particle, SRP54 subunit protein (TAIR:AT1G48900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-H04 introduced

  • F09246 - Specific phenotypes were NOT observed.
  • F10333 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

2 mutant lines found