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RAFL05-21-I22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01338)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-I22 - full reading 
TCCTCGATTT CAATCTTTGA GATAAACCAC AAAGATCCTC CGATTCGAAG 
GTTTATAAAA ACTCAAAATC GAATCTTATC CACAAGAAAA CAACAAGGTA 
CTTTTCCAAA AATGAAGGCG GAGTTGAATT TGCCGGCGGG ATTCCGATTT 
CATCCGACGG ACGAAGAGCT TGTCAAGTTC TATCTTTGCC GGAGATGTGC 
GTCAGAACCG ATTAACGTTC CGGTTATCGC AGAGATTGAC TTGTACAAAT 
TCAATCCAAG GGAGCTTCCA GAAATGGCGT TGTACGGTGA GAAAGAATGG 
TACTTCTTCT CGCATAGAGA CCGGAAATAC CCAAACGGGT CGAGACCAAA 
CCGGGCAGCT GGAACCGGTT ATTGGAAAGC GACTGGAGCT GATAAACCGA 
TCGGAAAACC GAAGACGTTA GGGATTAAGA AAGCACTCGT CTTCTACGCA 
GGAAAAGCTC CGAAAGGGAT TAAAACGAAT TGGATTATGC ACGAGTATCG 
TCTCGCTAAT GTCGATCGAT CTGCTTCTAC CAACAAGAAG AACAACTTAA 
GACTTGATGA TTGGGTTTTG TGTCGGATAT ACAATAAGAA AGGAACAATG 
GAGAAGTATT TACCGGCGGC GGCTGAGAAA CCGACGGAAA AGATGAGTAC 
GTCGGACTCA AGATGCTCAA GTCACGTGAT TTCACCGGAC GTCACGTGTT 
CTGATAACTG GGAGGTTGAG AGTGAGCCCA AATGGATTAA TCTGGAAGAC 
GCGTTAGAGG CATTTAATGA TGACACGTCC ATGTTTAGTT CCATTGGTTT 
GTTGCAAAAT GACGCCTTTG TTCCTCAGTT TCAGTACCAG TCCTCCGATT 
TCGTCGATTC GTTTCAGGAC CCGTTCGAGC AGAAACCGTT CTTGAATTGG 
AATTTTGCTC CTCAAGGGTA AAAATAATCG GCAAAAAGTT GAAGCTTTTC 
AGAGTCTTCG ATCACCGGCA TTGTGTCGGA TCCTGACCCG GAGACCAAGT 
CGGGTCATAC GATTACATAA TCGGGTTATT GAGATTTCCA CATTTGGATT 
TCCGAGACTA ACCAACTTAA CGGATTCTGG GGTAATTGGG GGGTTTTGCA 
CAGGTGAATC ACACTGAGTC AGCAAGTTTC GATTTTTTGG TTTTGTTTTG 
TAATGATTGA TTAAATGTCT AAAGATATCA CGAAGTTAAA AAAAAAAAAA 
AA

Gene models with high sequence identity

  1. AT5G63790.1 [+] show detail - NAC domain containing protein 102
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
superfamily No apical meristem (NAM) protein 5.6e-62
HMMPfam No apical meristem (NAM) protein 2e-48
ProfileScan No apical meristem (NAM) protein 57.55

See the detailed result >

AT5G63790.1

Model type
Protein coding
Short Description
NAC domain containing protein 102
Curator Summary
Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings.
Computational Description
NAC domain containing protein 102 (NAC102); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT5G08790.1); Has 3012 Blast hits to 3006 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3012; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-I22 introduced

  • F04223 - Specific phenotypes were NOT observed.
  • F11931 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found