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RAFL05-21-L01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07480)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-L01 - full reading 
ATTTTGTTTT GCGTTTCTGA ATTTGTGGCC ATTATCTTCT CACACTCTCT 
TCTCTTAGCT CACAGAGGAA AGAAAAATGG CGAATTCCAT TTCATCAATA 
TCTCTGCCTC GATGTTTCAT CTTCAACAAT GGTAGTCACA AATCAAGGCC 
ATGGCCAAGC TCAAGCAGTT TCTTTCTCAA CAAATCATCA AAGCATCATC 
CTCATCCACT ACTCTCTCTT TCTTCTTCGC CGTCTTCCGT CGTAGAAACT 
GATAATGACG ACGACAACGA CCTCACTTTC AGTGGTTGCA GAGCGTGTGG 
GAAAGAAGAG AAAGAGAGTG GGTGTAATGG TGACGGACGG ATTCAAGGTG 
GCATTGCAAC TGTCCCCGGT TTCGGTTGGT GGCCAATTAA GGCTTACAGG 
CCTTGTCCCG CGTTTGTTGA GGCCGGAGGT AGATACCGCC GCATAGGGCA 
GAGCATGGAC GAGGTTGCAT TTGGTCGTGG TGACTCTAAA TCCTCCACTT 
CTGTAGACAC CAGTGATTCA CTACTACGCC AGACAAAGCC AACAAGTTCT 
AGCAAAAGTT CAAACAAGTG ATATATAGCC CAGTTTTTCA AGTCCAAGAA 
GAACTTTTTT TGGAAATGTG TAATGATGAT TGGGCCTAAA CATATTATCG 
GCCCATTTAT AATTTTACGG CTCAATAGTT AAGAAACCCC AAAAAAAAAA 
AAAAAAA

Gene models with high sequence identity

  1. AT5G42070.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT5G42070.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-L01 introduced

  • F13335 - rosette leaf::abnormal / cauline leaf::epinastic / stem::present in fewer numbers in organism
  • F16608 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found